CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g55450

Gene name embryo-abundant protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.78 88.6 At1g55450 841992 embryo-abundant protein-related F:methyltransferase activity;P:response to salt stress;C:unknown;BPFMOA S.X. H.G.
0.86 93.1 At4g39640 830118 GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1) The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast. S.X. H.G.
0.82 90.9 At4g34150 829563 C2 domain-containing protein F:unknown;P:response to cold;C:unknown;MPFOBVA S.X. H.G.
0.75 86.9 At3g09830 820141 protein kinase, putative F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.71 84.2 At1g29690 839846 CAD1 (constitutively activated cell death 1) Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity. S.X. H.G.
0.71 84.2 At3g52400 824405 SYP122 (SYNTAXIN OF PLANTS 122) syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathway S.X. H.G.
0.64 78.9 At1g28380 839735 NSL1 (necrotic spotted lesions 1) This gene is predicted to encode a protein involved in negatively regulating salicylic acid-related defense responses and cell death programs. nsl1 mutants develop necrotic lesions spontaneously and show other features of a defense response, such as higher levels of SA and disease resistance-related transcripts, in the absence of a biotic stimulus. The NSL1 protein is predicted to have a MACPF domain, found in proteins that form a transmembrane pore in mammalian immune responses. NSL1 transcript levels do not appear to change in response to biotic stresses, but are elevated by cycloheximide in seedlings, and by sodium chloride in roots. S.X. H.G.
0.57 73.8 At3g45640 823706 ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) Encodes a mitogen-activated kinase whose mRNA levels increase in response to touch, cold, salinity stress and chitin oligomers.Also functions in ovule development. Heterozygous MPK3 mutants in a homozygous MPK6 background are female sterile due to defects in integument development. MPK3 can be dephosphorylated by MKP2 in vitro. S.X. H.G.
0.46 59.8 At3g59080 825077 aspartyl protease family protein F:DNA binding, aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
57.8 99.8 E-MEXP-807-raw-cel-1173273144
50.3 99.8 E-MEXP-807-raw-cel-1173273252
47.6 99.8 E-MEXP-807-raw-cel-1173273060
46.7 99.8 E-MEXP-807-raw-cel-1173273116
43.3 99.8 E-NASC-76-raw-cel-1359878951
43.2 99.8 E-NASC-76-raw-cel-1359879106
42.4 99.8 E-NASC-76-raw-cel-1359879132
37.7 99.7 E-MEXP-807-raw-cel-1173273088
37.3 99.7 E-MEXP-807-raw-cel-1173273223
35.2 99.7 E-NASC-76-raw-cel-1359879028
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.61 2e-68 260 At3g54150 824582 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA C.G. S.X.
0.18 1e-7 57 At3g61210 825293 embryo-abundant protein-related F:unknown;P:unknown;C:cellular_component unknown;BPFOMA C.G. S.X.
0.04 1e-4 48 At4g22530 828348 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA C.G. S.X.
0.05 5e-4 46 At5g10830 830950 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA C.G. S.X.
0.02 1e-1 38 At5g03200 831908 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;MOPVF C.G. S.X.
0.02 1e-1 38 At4g11780 826784 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPB C.G. S.X.
0.01 1e-1 38 At3g54760 824641 dentin sialophosphoprotein-related F:unknown;P:biological_process unknown;C:cytosol;MOBFPVA C.G. S.X.
0.02 5e-1 36 At4g24590 828561 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF C.G. S.X.
0.02 5e-1 36 At4g37580 829913 HLS1 (HOOKLESS 1) involved in apical hook development. putative N-acetyltransferase C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-1 36 Glycine max GmaAffx.65667.1.S1_at AW132771 - - 3e-1 At1g55450 embryo-abundant protein-related C.G. S.X.
0.02 2e-1 36 Hordeum vulgare Contig5949_s_at Contig5949 - - 2e+0 At4g14530 - C.G. S.X.
0.02 9e-1 36 Oryza sativa OsAffx.10536.1.S1_at - - - 0 C.G. S.X.
0.06 7e-7 56 Populus trichocarpa PtpAffx.125413.1.S1_at BU829918 - - 2e-1 At3g61210 embryo-abundant protein-related C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.27666.1.A1_s_at AF475117.1 DNA topoisomerase II inhibitor - 2e-2 At5g66540 - C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1607279_at CF212545 hypothetical protein LOC100242386 - 4e-1 At1g64750 ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) C.G. S.X.
0.03 5e-2 38 Zea mays Zm.6804.2.A1_at CK347487 hypothetical protein LOC100217058 - 1e-38 At1g29310 P-P-bond-hydrolysis-driven protein transmembrane transporter C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009651 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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