CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g54970

Gene name ATPRP1 (PROLINE-RICH PROTEIN 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g54970 841938 ATPRP1 (PROLINE-RICH PROTEIN 1) encodes a proline-rich protein that is specifically expressed in the root. S.X. H.G.
0.99 98.1 At2g20520 816574 FLA6 (FASCICLIN-LIKE ARABINOGALACTAN 6) fasciclin-like arabinogalactan-protein 6 (Fla6) S.X. H.G.
0.99 98.1 At5g57530 835857 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:cell wall, cytoplasm;PFBO S.X. H.G.
0.97 97.6 At5g19800 832100 hydroxyproline-rich glycoprotein family protein F:unknown;P:biological_process unknown;C:endomembrane system;MPOFBVA S.X. H.G.
0.96 97.3 At5g57540 835858 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO S.X. H.G.
0.95 97.0 At1g34510 840353 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO S.X. H.G.
0.94 96.7 At4g25220 828625 transporter, putative F:transporter activity;P:transport;C:unknown;BOFMAP S.X. H.G.
0.94 96.7 At5g22410 832302 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO S.X. H.G.
0.94 96.7 At4g25790 828684 allergen V5/Tpx-1-related family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBVA S.X. H.G.
0.93 96.4 At5g35190 833473 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
295.8 100.0 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
281.2 100.0 GSM142751 MJ001_ATH1_A2-jones-WT2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
178.8 100.0 E-MEXP-722-raw-cel-1062243559
161.8 99.9 GSM142754 MJ001_ATH1_A5-jones-WT-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
121.3 99.9 E-MEXP-722-raw-cel-1062243516
115.5 99.9 E-MEXP-722-raw-cel-1062243470
91.1 99.9 GSM133269 RIKEN-GODA6A-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
87.3 99.9 GSM133262 RIKEN-GODA2B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
86.7 99.9 GSM133984 Birnbaum_1-14_StageIII-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
77.0 99.9 GSM184837 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7 GSE7639 Expression analysis of root developmental zones after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.63 1e-78 293 At3g62680 825442 PRP3 (PROLINE-RICH PROTEIN 3) Proline-rich protein C.G. S.X.
0.06 3e-2 40 At2g47530 819366 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 5e-1 36 At5g38260 833808 serine/threonine protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 5e-1 36 At5g39420 833938 cdc2cAt (Arabidopsis thaliana cdc2c) F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:unknown;MPOFBVA C.G. S.X.
0.01 5e-1 36 At3g22980 821872 elongation factor Tu family protein F:translation factor activity, nucleic acid binding, GTP binding, GTPase activity;P:biological_process unknown;C:cellular_component unknown;BOMFAP C.G. S.X.
0.02 2e+0 34 At4g22666 3770028 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.02 2e+0 34 At3g17090 820966 protein phosphatase 2C family protein / PP2C family protein F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:endomembrane system, protein serine/threonine phosphatase complex;PMOFBV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e+0 34 Glycine max Gma.79.5.S1_s_at AI441027 - - 4e-1 At4g38770 PRP4 (PROLINE-RICH PROTEIN 4) C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig9190_at Contig9190 - - 2e+0 At1g53950 ubiquitin family protein C.G. S.X.
0.02 4e+0 34 Oryza sativa Os07g0667200 NM_186091.1 - - 6e+0 At5g66590 allergen V5/Tpx-1-related family protein C.G. S.X.
0.03 3e+0 34 Populus trichocarpa PtpAffx.73922.1.S1_s_at DN501167 hypothetical protein - 2e-11 At2g30800 HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM) C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.119822.2.S1_s_at BJ244064 - - 1e+0 At4g29020 glycine-rich protein C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1611338_at CB836214 - - 4e+0 At1g74990 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 3e+0 32 Zea mays ZmAffx.818.1.S1_at AI770442 plant-specific domain TIGR01568 family protein - 3e+0 At5g05380 PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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