CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g54890

Gene name late embryogenesis abundant protein-related / LEA protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.42 53.9 At1g54890 841928 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.57 73.8 At2g30340 817584 LBD13 (LOB DOMAIN-CONTAINING PROTEIN 13) F:molecular_function unknown;P:biological_process unknown;C:membrane;PMOFVBA S.X. H.G.
0.52 67.4 At2g43610 818963 glycoside hydrolase family 19 protein F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:plasma membrane;PBFOVM S.X. H.G.
0.48 62.5 At1g74500 843791 bHLH family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P S.X. H.G.
0.42 53.9 At4g31320 829259 auxin-responsive protein, putative / small auxin up RNA (SAUR_C) F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;PO S.X. H.G.
0.42 53.9 At2g47140 819327 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV S.X. H.G.
0.38 46.7 At1g31950 840085 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;PO S.X. H.G.
0.38 46.7 At5g57090 835813 EIR1 (ETHYLENE INSENSITIVE ROOT 1) Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity. S.X. H.G.
0.36 43.6 At5g10720 830938 AHK5 (ARABIDOPSIS HISTIDINE KINASE 5) member of Histidine Kinase S.X. H.G.
0.35 41.6 At1g78340 844169 ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
163.9 99.9 GSM252692 Section of Root from 270 mm to 340 mm harvested immediately rep3 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
159.2 99.9 GSM252678 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 13 hrs Taking 70 mm of Stump (4dpg) rep4 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
152.3 99.9 GSM252691 Section of Root from 270 mm to 340 mm harvested immediately rep2 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
97.2 99.9 GSM226546 Slice4JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
97.1 99.9 GSM252676 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 13 hrs Taking 70 mm of Stump (4dpg) rep2 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
94.7 99.9 GSM252675 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 13 hrs Taking 70 mm of Stump (4dpg) rep1 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
93.5 99.9 GSM252690 Section of Root from 270 mm to 340 mm harvested immediately rep1 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
85.2 99.9 GSM184833 Arabidopsis, root, longitudinal zone 2, standard conditions, replicate 3 GSE7639 Expression analysis of root developmental zones after treatment with salt
81.0 99.9 GSM252677 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 13 hrs Taking 70 mm of Stump (4dpg) rep3 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
78.3 99.9 GSM226535 L5SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.09 2e-9 63 At5g54370 835525 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.09 1e-4 48 At4g27400 828848 late embryogenesis abundant protein-related / LEA protein-related F:unknown;P:response to salt stress;C:endomembrane system;P C.G. S.X.
0.02 1e-1 38 At3g19430 821477 late embryogenesis abundant protein-related / LEA protein-related F:structural constituent of cell wall;P:unknown;C:unknown;MBOFPVA C.G. S.X.
0.01 5e-1 36 At5g59810 836102 SBT5.4 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:unknown;BPOFAM C.G. S.X.
0.02 5e-1 36 At1g23280 838937 MAK16 protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.03 2e+0 34 At4g01575 828124 serine protease inhibitor, Kazal-type family protein F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 2e+0 34 At2g02560 814786 CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED) Arabidopsis thaliana homolog of human CAND1 (cullin-associated and neddylation-dissociated). Putative similarity to TBP-interacting protein TIP120. Ubiquitously expressed in plant tissues throughout development. T-DNA insertion mutant plants were completely sterile and resistant to sirtinol and auxin, but not to gibberellins or brassinolide. Displayed developmental phenotypes similar to those of axr1, namely, short petioles, downwardly curling leaves, shorter inflorescence. Required for SCF function and appears to modulate SCF complex cycling. Physically interacts with CUL1. C.G. S.X.
0.01 2e+0 34 At2g37280 818305 PDR5 (PLEIOTROPIC DRUG RESISTANCE 5) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 8e-4 46 Glycine max GmaAffx.37315.1.S1_at BM884996 - - 3e-4 At1g54890 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.02 4e+0 32 Hordeum vulgare HVSMEn0009M15f_at HVSMEn0009M15f - - 1e-3 At1g32400 TOM2A (TOBAMOVIRUS MULTIPLICATION 2A) C.G. S.X.
0.02 1e+0 36 Oryza sativa Os11g0151200 AK106826.1 - Conserved hypothetical protein 2e-1 At5g54370 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.15 1e-5 52 Populus trichocarpa PtpAffx.209991.1.S1_at pmrna19711 hypothetical protein - 8e-6 At1g54890 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.120360.1.A1_at BJ229131 - - 1e+0 At1g54890 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1617331_at CB348070 hypothetical protein LOC100242353 - 2e-12 At1g80160 lactoylglutathione lyase family protein / glyoxalase I family protein C.G. S.X.
0.03 4e+0 32 Zea mays Zm.5304.1.A1_at AI619177 - - 4e-1 At2g10535 LCR29 (Low-molecular-weight cysteine-rich 29) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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