Gene omics information

Query gene ID At1g54880
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g54880841927unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8793.5At5g26620832728unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8793.5At5g14560831307unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8693.1At4g02970828121AT7SL-1 (Arabidopsis 7SL RNA 1)Signal recognition particle. Type 4 of RNA polymerase III dependent genes.S.X.H.G.
0.8592.4At2g13900815874DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOS.X.H.G.
0.8491.9At2g40440818638BTB/POZ domain-containing proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
0.8391.4At5g66370836769unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFS.X.H.G.
0.8391.4At5g27810832843sequence-specific DNA binding / transcription factorF:transcription factor activity, sequence-specific DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PS.X.H.G.
0.8290.9At1g29730839851ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAS.X.H.G.
0.8190.4At1g32650840159unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
482.7100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
363.9100.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
323.6100.0GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
317.3100.0GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
310.5100.0GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
304.1100.0GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
298.5100.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
298.2100.0GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
284.0100.0GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
282.8100.0GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.029e-236At3g13590820561DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;POC.G.S.X.
0.023e-134At4g30860829210SDG4 (SET DOMAIN GROUP 4)Encodes a member of the trxG protein family. Contains a SET domain which is known to be involved in modification of histone tails by methylation. Interacts physically with AMS, but the implications of this interaction are unknown.Overexpression results in plieotrophic developmental defects.C.G.S.X.
0.033e-134At2g35210818088RPA (ROOT AND POLLEN ARFGAP)A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.C.G.S.X.
0.053e-134At1g58225842190unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.051e+032At3g09380820096-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPC.G.S.X.
0.011e+032At3g06450819821anion exchange family proteinF:anion exchanger activity;P:anion transport;C:plasma membrane;MFPOBVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.065e-134Glycine maxGma.8244.2.S1_atBE611291--9e-1At1g19990unknown proteinC.G.S.X.
0.033e+030Hordeum vulgareContig24605_atContig24605--1e-1At1g51510Y14C.G.S.X.
0.073e+032Oryza sativaOsAffx.23526.1.S1_at---0C.G.S.X.
0.062e+032Populus trichocarpaPtpAffx.84308.1.A1_atCK091149--3e+0At5g42290transcription activator-relatedC.G.S.X.
0.102e-238Triticum aestivumTaAffx.12444.1.A1_atBJ263045--2e-2At1g54880unknown proteinC.G.S.X.
0.086e+028Vitis vinifera1621429_atCB971575--1e+0At5g60560F-box family proteinC.G.S.X.
0.046e-132Zea maysZm.15873.1.A1_atBM339859IDP1704 protein-8e-5At1g63180UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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