Gene omics information

Query gene ID At1g54870
Gene name binding / catalytic/ oxidoreductase
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g54870841926binding / catalytic/ oxidoreductaseF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast;BOMFPAVS.X.H.G.
0.7788.0At2g21490816688LEA (DEHYDRIN LEA)F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMFOBVS.X.H.G.
0.6781.6At4g16160827308mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinHomologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family. Two OEP16 genes are closely related to each other and are conserved in all land plants, OEP16-2, also named OEP16-S, and OEP16-1 (renamed OEP16-L) are result of the gene duplication event that occurred prior to divergence of bryophytes and seed plants. Predominantly expressed in seed and is not inducible by cold treatment. atOEP16-S gained an additional exon. The promoter region of atOEP16-S (but not atOEP16-L) contains multiple G-box ABA-responsive elements. The atOEP16-S promoter conferred developmentally regulated seed- and pollen-specific GUS expression in tobacco.S.X.H.G.
0.5974.7At3g11050820276ATFER2 (ferritin 2)F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAFS.X.H.G.
0.5368.6At3g12960820482unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.5368.6At3g50980824262XERO1 (DEHYDRIN XERO 1)F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMS.X.H.G.
0.4355.3At5g22470832308NAD+ ADP-ribosyltransferaseF:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
305.0100.0GSM131704ATGE_83_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
280.3100.0GSM131705ATGE_83_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
279.4100.0GSM131703ATGE_83_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
271.6100.0GSM131707ATGE_84_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
268.9100.0GSM131708ATGE_84_DGSE5634AtGenExpress: Developmental series (siliques and seeds)
260.9100.0GSM131700ATGE_82_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
244.6100.0GSM131706ATGE_84_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
222.5100.0GSM10454WT Post-Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
220.0100.0GSM10456WT Post-Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
207.5100.0GSM131701ATGE_82_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.242e-1377At3g05260819690short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVC.G.S.X.
0.023e-240At1g63380842644binding / catalytic/ oxidoreductaseF:oxidoreductase activity, binding, catalytic activity;P:metabolic process, non-phosphorylated glucose catabolic process;C:cellular_component unknown;BOMFPAVC.G.S.X.
0.011e-138At1g07650837278leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.021e-138At1g29050839779unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;POC.G.S.X.
0.015e-136At3g49060824068protein kinase family protein / U-box domain-containing proteinF:in 6 functions;P:protein amino acid phosphorylation, protein ubiquitination;C:plasma membrane;MPOBFVAC.G.S.X.
0.025e-136At2g33600817926cinnamoyl-CoA reductase familyF:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:unknown;BOPFMAVC.G.S.X.
0.015e-136At1g76780844012-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.022e+034At5g37530833731thiF family proteinF:binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.123e-963Glycine maxGmaAffx.40455.1.S1_atBG043272--2e-9At1g54870binding / catalytic/ oxidoreductaseC.G.S.X.
0.034e-342Hordeum vulgareContig2483_atContig2483--1e-2At1g54870binding / catalytic/ oxidoreductaseC.G.S.X.
0.031e+036Oryza sativaOs02g0249600BI801677-Glutelin type-B 2 precursor4e+0At3g11280myb family transcription factorC.G.S.X.
0.178e-756Populus trichocarpaPtp.5281.1.S1_s_atCK115532hypothetical protein-4e-7At1g54870binding / catalytic/ oxidoreductaseC.G.S.X.
0.038e-342Triticum aestivumTa.20583.2.S1_a_atCD910001--1e-2At1g54870binding / catalytic/ oxidoreductaseC.G.S.X.
0.022e+032Vitis vinifera1621224_atCD801412--3e+0At3g49770unknown proteinC.G.S.X.
0.033e-342Zea maysZm.875.1.A1_atAY106374.1--4e-4At3g14860NHL repeat-containing proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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