Gene omics information

Query gene ID At1g54780
Gene name thylakoid lumen 18.3 kDa protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7486.1At1g54780841919thylakoid lumen 18.3 kDa proteinF:molecular_function unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BPOMS.X.H.G.
0.9296.0At5g46110834652APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)mutant has Altered acclimation responses; Chloroplast Triose Phosphate TranslocatorS.X.H.G.
0.9296.0At5g66570836789PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In Arabidopsis thaliana the PsbO proteins are encoded by two genes: psbO1 and psbO2. PsbO1 is the major isoform in the wild-type.S.X.H.G.
0.9095.1At5g01530830325chlorophyll A-B binding protein CP29 (LHCB4)F:chlorophyll binding;P:response to blue light, response to red light, response to far red light, photosynthesis;C:in 6 components;POMS.X.H.G.
0.8894.0At1g20340838622DRT112recombination and DNA-damage resistance protein (DRT112) One of two Arabidopsis plastocyanin genes. Predominant form, expressed 10x higher than PETE1. PETE2 is thought to be post-transcriptionally regulated via copper accumulation and is involved in copper homeostasis.S.X.H.G.
0.8793.5At3g16140820859PSAH-1 (photosystem I subunit H-1)Encodes subunit H of photosystem I reaction center subunit VI.S.X.H.G.
0.8693.1At1g08380837358PSAO (photosystem I subunit O)Encodes subunit O of photosystem I.S.X.H.G.
0.8693.1At4g05180825866PSBQ-2Encodes the PsbQ subunit of the oxygen evolving complex of photosystem II.S.X.H.G.
0.8693.1At4g28750828996PSAE-1 (PSA E1 KNOCKOUT)mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Subunit E of Photosystem IS.X.H.G.
0.8592.4At1g30380839918PSAK (photosystem I subunit K)Encodes subunit K of photosystem I reaction center.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
4.397.7GSM151697gh3.5-1D uninoculated, biological replicate 1GSE6556Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.024e-136At4g13000826913protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVAC.G.S.X.
0.024e-136At4g28050828920TET7 (TETRASPANIN7)Member of TETRASPANIN familyC.G.S.X.
0.014e-136At2g33490817914hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFPBVAC.G.S.X.
0.012e+034At5g15470831400GAUT14 (Galacturonosyltransferase 14)Encodes a protein with putative galacturonosyltransferase activity.C.G.S.X.
0.022e+034At3g18420821371tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BOAMPFC.G.S.X.
0.032e+034At2g36900818264MEMB11 (MEMBRIN 11)member of Membrin Gene FamilyC.G.S.X.
0.012e+034At2g07040815274PRK2APollen receptor kinase. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth.C.G.S.X.
0.012e+034At2g28450817393zinc finger (CCCH-type) family proteinF:methyltransferase activity, zinc ion binding, RNA methyltransferase activity, nucleic acid binding;P:acetate biosynthetic process from carbon monoxide, methanol oxidation, RNA processing;C:cellular_component unknown;BOMFAPVC.G.S.X.
0.012e+034At2g16390816136DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1)Putative chromatin remodeling protein, member of a plant-specific subfamily of SWI2/SNF2-like proteins. Mutations nearly eliminate non-CpG methylation at a target promoter but do not affect rDNA or centromere methylation. Cooperates with PolIVb to facilitate RNA-directed de novo methylation and silencing of homologous DNA. Endogenous targets include intergenic regions near retrotransposon LTRs or short RNA encoding sequences that might epigenetically regulate adjacent genes. May be used to establish a basal yet reversible level of silencing in euchromatin.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.162e-1997Glycine maxGma.6887.1.S1_atCD411595--2e-19At1g54780thylakoid lumen 18.3 kDa proteinC.G.S.X.
0.072e-136Hordeum vulgareContig8236_atContig8236--5e-1At1g54780thylakoid lumen 18.3 kDa proteinC.G.S.X.
0.063e+034Oryza sativaOs05g0401100AK067179.1-Protein of unknown function DUF477 family protein6e-1At2g37580zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.417e-1995Populus trichocarpaPtpAffx.6619.1.A1_atCV244255hypothetical protein-4e-14At1g54780thylakoid lumen 18.3 kDa proteinC.G.S.X.
0.037e+032Triticum aestivumTaAffx.78847.1.S1_atCA725710--1e-1At2g23130AGP17 (ARABINOGALACTAN PROTEIN 17)C.G.S.X.
0.263e-27121Vitis vinifera1612945_s_atCF213687hypothetical protein LOC100254639-1e-26At1g54780thylakoid lumen 18.3 kDa proteinC.G.S.X.
0.027e-134Zea maysZm.6662.1.A1_a_atAY108391.150S ribosomal protein L20-3e-5At1g16740ribosomal protein L20 family proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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