CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g54780

Gene name thylakoid lumen 18.3 kDa protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.74 86.1 At1g54780 841919 thylakoid lumen 18.3 kDa protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BPOM S.X. H.G.
0.92 96.0 At5g46110 834652 APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) mutant has Altered acclimation responses; Chloroplast Triose Phosphate Translocator S.X. H.G.
0.92 96.0 At5g66570 836789 PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1) Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In Arabidopsis thaliana the PsbO proteins are encoded by two genes: psbO1 and psbO2. PsbO1 is the major isoform in the wild-type. S.X. H.G.
0.90 95.1 At5g01530 830325 chlorophyll A-B binding protein CP29 (LHCB4) F:chlorophyll binding;P:response to blue light, response to red light, response to far red light, photosynthesis;C:in 6 components;POM S.X. H.G.
0.88 94.0 At1g20340 838622 DRT112 recombination and DNA-damage resistance protein (DRT112) One of two Arabidopsis plastocyanin genes. Predominant form, expressed 10x higher than PETE1. PETE2 is thought to be post-transcriptionally regulated via copper accumulation and is involved in copper homeostasis. S.X. H.G.
0.87 93.5 At3g16140 820859 PSAH-1 (photosystem I subunit H-1) Encodes subunit H of photosystem I reaction center subunit VI. S.X. H.G.
0.86 93.1 At1g08380 837358 PSAO (photosystem I subunit O) Encodes subunit O of photosystem I. S.X. H.G.
0.86 93.1 At4g05180 825866 PSBQ-2 Encodes the PsbQ subunit of the oxygen evolving complex of photosystem II. S.X. H.G.
0.86 93.1 At4g28750 828996 PSAE-1 (PSA E1 KNOCKOUT) mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Subunit E of Photosystem I S.X. H.G.
0.85 92.4 At1g30380 839918 PSAK (photosystem I subunit K) Encodes subunit K of photosystem I reaction center. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.2 98.2 E-MEXP-1454-raw-cel-1585858217
5.1 98.2 E-MEXP-1454-raw-cel-1585858327
4.8 98.0 E-ATMX-26-raw-cel-1441077097
4.8 98.0 E-ATMX-20-raw-cel-1380188935
4.7 98.0 E-MEXP-1454-raw-cel-1585858363
4.6 97.9 E-MEXP-1454-raw-cel-1585858399
4.4 97.8 E-MEXP-1454-raw-cel-1585858181
4.4 97.8 E-ATMX-20-raw-cel-1380188822
4.3 97.7 GSM151697 gh3.5-1D uninoculated, biological replicate 1 GSE6556 Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)
4.2 97.6 E-MEXP-1967-raw-cel-1710625712
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-1 36 At4g13000 826913 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVA C.G. S.X.
0.02 4e-1 36 At4g28050 828920 TET7 (TETRASPANIN7) Member of TETRASPANIN family C.G. S.X.
0.01 4e-1 36 At2g33490 817914 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFPBVA C.G. S.X.
0.01 2e+0 34 At5g15470 831400 GAUT14 (Galacturonosyltransferase 14) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.02 2e+0 34 At3g18420 821371 tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BOAMPF C.G. S.X.
0.03 2e+0 34 At2g36900 818264 MEMB11 (MEMBRIN 11) member of Membrin Gene Family C.G. S.X.
0.01 2e+0 34 At2g07040 815274 PRK2A Pollen receptor kinase. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth. C.G. S.X.
0.01 2e+0 34 At2g28450 817393 zinc finger (CCCH-type) family protein F:methyltransferase activity, zinc ion binding, RNA methyltransferase activity, nucleic acid binding;P:acetate biosynthetic process from carbon monoxide, methanol oxidation, RNA processing;C:cellular_component unknown;BOMFAPV C.G. S.X.
0.01 2e+0 34 At2g16390 816136 DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1) Putative chromatin remodeling protein, member of a plant-specific subfamily of SWI2/SNF2-like proteins. Mutations nearly eliminate non-CpG methylation at a target promoter but do not affect rDNA or centromere methylation. Cooperates with PolIVb to facilitate RNA-directed de novo methylation and silencing of homologous DNA. Endogenous targets include intergenic regions near retrotransposon LTRs or short RNA encoding sequences that might epigenetically regulate adjacent genes. May be used to establish a basal yet reversible level of silencing in euchromatin. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 2e-19 97 Glycine max Gma.6887.1.S1_at CD411595 - - 2e-19 At1g54780 thylakoid lumen 18.3 kDa protein C.G. S.X.
0.07 2e-1 36 Hordeum vulgare Contig8236_at Contig8236 - - 5e-1 At1g54780 thylakoid lumen 18.3 kDa protein C.G. S.X.
0.06 3e+0 34 Oryza sativa Os05g0401100 AK067179.1 - Protein of unknown function DUF477 family protein 6e-1 At2g37580 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.41 7e-19 95 Populus trichocarpa PtpAffx.6619.1.A1_at CV244255 hypothetical protein - 4e-14 At1g54780 thylakoid lumen 18.3 kDa protein C.G. S.X.
0.03 7e+0 32 Triticum aestivum TaAffx.78847.1.S1_at CA725710 - - 1e-1 At2g23130 AGP17 (ARABINOGALACTAN PROTEIN 17) C.G. S.X.
0.26 3e-27 121 Vitis vinifera 1612945_s_at CF213687 hypothetical protein LOC100254639 - 1e-26 At1g54780 thylakoid lumen 18.3 kDa protein C.G. S.X.
0.02 7e-1 34 Zea mays Zm.6662.1.A1_a_at AY108391.1 50S ribosomal protein L20 - 3e-5 At1g16740 ribosomal protein L20 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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