CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g54740

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.17 10.2 At1g54740 841915 - F:molecular_function unknown;P:biological_process unknown;C:unknown;OPMBF S.X. H.G.
0.73 85.5 At3g47340 823888 ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. S.X. H.G.
0.61 76.7 At4g35770 829730 SEN1 (SENESCENCE 1) Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant. S.X. H.G.
0.57 73.8 At1g03090 838362 MCCA MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion. S.X. H.G.
0.33 38.1 At3g13450 820547 DIN4 (DARK INDUCIBLE 4) branched chain alpha-keto acid dehydrogenase E1 beta S.X. H.G.
0.33 38.1 At3g45300 823668 IVD (ISOVALERYL-COA-DEHYDROGENASE) Encodes isovaleryl-coenzyme a dehydrogenase. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
106.8 99.9 GSM133400 Knight_2-3_sfr6-lt_Rep1_ATH1 GSE5710 Dark-induced gene expression in sfr6
63.2 99.8 GSM142778 AM002_ATH1_A3-MCCOR-GFA GSE6169 Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
63.1 99.8 GSM142779 AM002_ATH1_A4-MCCOR-GDA GSE6169 Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
58.1 99.8 GSM142772 AM002_ATH1_A7-MCCOR-GFB GSE6169 Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
57.8 99.8 E-MEXP-513-raw-cel-829814366
48.3 99.8 GSM253158 4h into an extended nightA GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
47.3 99.8 E-MEXP-513-raw-cel-829814382
46.4 99.8 GSM142773 AM002_ATH1_A8-MCCOR-GDB GSE6169 Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
42.6 99.8 E-MEXP-513-raw-cel-829814414
39.2 99.8 E-MEXP-1299-raw-cel-1519903848
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-1 38 At1g22310 838838 MBD8 Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. C.G. S.X.
0.01 4e-1 36 At3g06400 819814 CHR11 (CHROMATIN-REMODELING PROTEIN 11) Encodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature. C.G. S.X.
0.02 4e-1 36 At3g01311 2745866 - F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.01 4e-1 36 At2g25320 817070 - F:unknown;P:unknown;C:chloroplast;MOBFPAV C.G. S.X.
0.01 4e-1 36 At2g25330 817071 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOF C.G. S.X.
0.02 4e-1 36 At1g75240 843861 AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33) F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PMOFBV C.G. S.X.
0.01 2e+0 34 At5g35360 833497 CAC2 Encodes biotin carboxylase subunit (CAC2). C.G. S.X.
0.01 2e+0 34 At5g22450 832306 unknown protein F:unknown;P:unknown;C:chloroplast;MOPBF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Glycine max PsAffx.psHB041xJ15f_at PsAffx.psHB041xJ15f - - 1e+0 At3g25080 unknown protein C.G. S.X.
0.02 6e-2 38 Hordeum vulgare Contig7941_s_at Contig7941 - - 2e+0 At3g28950 avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related C.G. S.X.
0.03 4e+0 34 Oryza sativa OsAffx.5130.1.S1_x_at - - - 0 C.G. S.X.
0.03 6e-1 36 Populus trichocarpa PtpAffx.210064.1.S1_x_at pmrna19824 hypothetical protein - 2e+0 At5g39230 transcription initiation factor-related C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.133323.1.S1_at BJ235784 - - 3e-1 At5g42655 - C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1613875_at CA816775 - - 2e-1 At3g29638 - C.G. S.X.
0.02 8e-1 34 Zea mays Zm.18010.1.A1_at CA400888 - - 2e+0 At1g22840 CYTC-1 (CYTOCHROME C-1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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