CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g54700

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.84 91.9 At1g54700 841911 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P S.X. H.G.
0.59 74.7 At3g61730 825346 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.59 74.7 At3g26620 822274 LBD23 (LOB DOMAIN-CONTAINING PROTEIN 23) F:unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.58 73.8 At1g74480 843789 RWP-RK domain-containing protein F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POFM S.X. H.G.
0.57 73.8 At4g26380 828744 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOF S.X. H.G.
0.56 73.0 At5g08490 830748 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF S.X. H.G.
0.56 73.0 At1g01410 837547 APUM22 (Arabidopsis Pumilio 22) F:RNA binding, binding;P:biological_process unknown;C:cellular_component unknown;POFM S.X. H.G.
0.56 73.0 At4g39756 830133 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOAV S.X. H.G.
0.56 73.0 At3g49280 824089 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.53 68.6 At3g45490 823689 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
341.1 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
302.8 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
292.9 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
278.3 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
275.1 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
265.4 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
255.4 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
245.3 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
239.9 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
239.6 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-1 36 At5g62370 836358 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA C.G. S.X.
0.03 1e-1 36 At3g58630 825032 transcription factor F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMOF C.G. S.X.
0.06 5e-1 34 At3g20340 821578 - Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. C.G. S.X.
0.03 5e-1 34 At3g25710 822159 BHLH32 (BASIC HELIX-LOOP-HELIX 32) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO C.G. S.X.
0.07 5e-1 34 At3g10860 820256 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative F:ubiquinol-cytochrome-c reductase activity;P:unknown;C:mitochondrion, mitochondrial respiratory chain complex III, membrane;P C.G. S.X.
0.01 5e-1 34 At1g49870 841410 - F:unknown;P:unknown;C:chloroplast;MOBFPAV C.G. S.X.
0.07 5e-1 34 At1g21395 2745759 unknown protein F:molecular_function unknown;P:biological_process unknown;C:membrane;P C.G. S.X.
0.05 2e+0 32 At5g05965 830482 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PB C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-1 36 Glycine max HgAffx.17187.1.S1_at CB279169 - - 2e-1 At1g54700 - C.G. S.X.
0.04 4e+0 30 Hordeum vulgare HA12H17u_s_at HA12H17u - - 1e-21 At5g27720 emb1644 (embryo defective 1644) C.G. S.X.
0.03 4e+0 32 Oryza sativa Os02g0280500 AK058486.1 - Glyoxalase I 1e-10 At1g67280 lactoylglutathione lyase, putative / glyoxalase I, putative C.G. S.X.
0.04 3e+0 32 Populus trichocarpa PtpAffx.49889.1.A1_s_at CA821415 hypothetical protein - 4e+0 At1g54700 - C.G. S.X.
0.07 2e-3 42 Triticum aestivum Ta.24097.1.A1_at AY015491.1 - - 2e-3 At1g54700 - C.G. S.X.
0.06 2e+0 30 Vitis vinifera 1610632_at CF208658 - - 2e+0 Atmg00690 - C.G. S.X.
0.04 3e+0 30 Zea mays ZmAffx.448.1.A1_at AI677105 Hexokinase - 3e+0 At4g29130 HXK1 (HEXOKINASE 1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage