Gene omics information

Query gene ID At1g54700
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8491.9At1g54700841911-F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PS.X.H.G.
0.5974.7At3g61730825346unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMS.X.H.G.
0.5974.7At3g26620822274LBD23 (LOB DOMAIN-CONTAINING PROTEIN 23)F:unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.5873.8At1g74480843789RWP-RK domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POFMS.X.H.G.
0.5773.8At4g26380828744DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOFS.X.H.G.
0.5673.0At5g08490830748pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFS.X.H.G.
0.5673.0At1g01410837547APUM22 (Arabidopsis Pumilio 22)F:RNA binding, binding;P:biological_process unknown;C:cellular_component unknown;POFMS.X.H.G.
0.5673.0At4g39756830133kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOAVS.X.H.G.
0.5673.0At3g49280824089transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.5368.6At3g45490823689-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
341.1100.0GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
302.8100.0GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
292.9100.0GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
278.3100.0GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
275.1100.0GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
265.4100.0GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
255.4100.0GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
245.3100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
239.9100.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
239.6100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-136At5g62370836358pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAC.G.S.X.
0.031e-136At3g58630825032transcription factorF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMOFC.G.S.X.
0.065e-134At3g20340821578-Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.C.G.S.X.
0.035e-134At3g25710822159BHLH32 (BASIC HELIX-LOOP-HELIX 32)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOC.G.S.X.
0.075e-134At3g10860820256ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putativeF:ubiquinol-cytochrome-c reductase activity;P:unknown;C:mitochondrion, mitochondrial respiratory chain complex III, membrane;PC.G.S.X.
0.015e-134At1g49870841410-F:unknown;P:unknown;C:chloroplast;MOBFPAVC.G.S.X.
0.075e-134At1g213952745759unknown proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PC.G.S.X.
0.052e+032At5g05965830482unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.062e-136Glycine maxHgAffx.17187.1.S1_atCB279169--2e-1At1g54700-C.G.S.X.
0.044e+030Hordeum vulgareHA12H17u_s_atHA12H17u--1e-21At5g27720emb1644 (embryo defective 1644)C.G.S.X.
0.034e+032Oryza sativaOs02g0280500AK058486.1-Glyoxalase I1e-10At1g67280lactoylglutathione lyase, putative / glyoxalase I, putativeC.G.S.X.
0.043e+032Populus trichocarpaPtpAffx.49889.1.A1_s_atCA821415hypothetical protein-4e+0At1g54700-C.G.S.X.
0.072e-342Triticum aestivumTa.24097.1.A1_atAY015491.1--2e-3At1g54700-C.G.S.X.
0.062e+030Vitis vinifera1610632_atCF208658--2e+0Atmg00690-C.G.S.X.
0.043e+030Zea maysZmAffx.448.1.A1_atAI677105Hexokinase-3e+0At4g29130HXK1 (HEXOKINASE 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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