CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g54290

Gene name eukaryotic translation initiation factor SUI1, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.71 84.2 At1g54290 841870 eukaryotic translation initiation factor SUI1, putative F:translation initiation factor activity;P:translational initiation, translation;C:cellular_component unknown;MPFOAVB S.X. H.G.
0.74 86.1 At3g47080 823861 binding F:binding;P:unknown;C:unknown;PBOAM S.X. H.G.
0.67 81.6 At1g06700 837180 serine/threonine protein kinase, putative F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.67 81.6 At1g22200 838825 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MOFP S.X. H.G.
0.67 81.6 At5g58950 836012 protein kinase family protein F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MPOFBVA S.X. H.G.
0.66 80.1 At1g15350 838104 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO S.X. H.G.
0.65 79.6 At4g20380 827786 zinc finger protein (LSD1) LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge S.X. H.G.
0.64 78.9 At1g54920 841930 unknown protein F:molecular_function unknown;P:biological_process unknown;C:membrane;MOPFB S.X. H.G.
0.64 78.9 At4g20890 827837 TUB9 tubulin 9 S.X. H.G.
0.63 78.1 At1g05960 837106 binding F:binding;P:biological_process unknown;C:plasma membrane;MFPBO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
74.6 99.9 GSM154505 Arabidopsis hydrated pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
62.4 99.8 GSM154503 Arabidopsis desiccated mature pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
61.6 99.8 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
57.9 99.8 E-MEXP-285-raw-cel-440782725
52.9 99.8 GSM154507 Arabidopsis growing pollen tubes rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
49.4 99.8 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
47.2 99.8 E-MEXP-285-raw-cel-440782791
43.0 99.8 GSM239252 Columbia glabrous (C24) wild type stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
37.8 99.8 E-MEXP-1138-raw-cel-1432772938
37.0 99.7 E-MEXP-1138-raw-cel-1432772714
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.81 7e-87 319 At4g27130 828821 eukaryotic translation initiation factor SUI1, putative F:translation initiation factor activity;P:translational initiation, translation;C:cellular_component unknown;MPFOAVB C.G. S.X.
0.79 4e-73 274 At5g54760 835566 eukaryotic translation initiation factor SUI1, putative F:translation initiation factor activity;P:translational initiation, translation;C:cellular_component unknown;MPFOAVB C.G. S.X.
0.39 3e-6 52 At5g54940 835585 eukaryotic translation initiation factor SUI1, putative F:translation initiation factor activity;P:translational initiation, translation;C:cellular_component unknown;MPFOABV C.G. S.X.
0.02 2e-1 36 At1g79030 844244 DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV C.G. S.X.
0.01 6e-1 34 At5g60930 836214 chromosome-associated kinesin, putative F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFBPAV C.G. S.X.
0.01 6e-1 34 At3g18230 821351 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein F:unknown;P:unknown;C:cytosol, nucleus;MOFPBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.46 2e-44 178 Glycine max GmaAffx.90705.1.A1_s_at CF809069 - - 2e-52 At4g27130 eukaryotic translation initiation factor SUI1, putative C.G. S.X.
0.38 9e-14 75 Hordeum vulgare Contig2583_s_at Contig2583 - - 3e-11 At4g27130 eukaryotic translation initiation factor SUI1, putative C.G. S.X.
0.28 1e-19 97 Oryza sativa Os07g0530100 AK069279.1 - Tyrosyl-DNA phosphodiesterase family protein 9e-14 At5g15170 tyrosyl-DNA phosphodiesterase-related C.G. S.X.
0.42 2e-44 178 Populus trichocarpa PtpAffx.31053.2.A1_at CV274692 hypothetical protein - 1e-35 At5g54760 eukaryotic translation initiation factor SUI1, putative C.G. S.X.
0.50 6e-32 137 Triticum aestivum Ta.746.2.S1_at CA484346 - - 1e-31 At1g54290 eukaryotic translation initiation factor SUI1, putative C.G. S.X.
0.44 2e-44 176 Vitis vinifera 1620220_at CB345823 hypothetical protein LOC100243115 - 7e-46 At5g54760 eukaryotic translation initiation factor SUI1, putative C.G. S.X.
0.40 2e-33 141 Zea mays Zm.355.1.S1_at AF034944.1 translation initiation factor1 - 1e-32 At1g54290 eukaryotic translation initiation factor SUI1, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006413 The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
L GO:0006412 The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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