Gene omics information

Query gene ID At1g54290
Gene name eukaryotic translation initiation factor SUI1, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7184.2At1g54290841870eukaryotic translation initiation factor SUI1, putativeF:translation initiation factor activity;P:translational initiation, translation;C:cellular_component unknown;MPFOAVBS.X.H.G.
0.7486.1At3g47080823861bindingF:binding;P:unknown;C:unknown;PBOAMS.X.H.G.
0.6781.6At1g06700837180serine/threonine protein kinase, putativeF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAS.X.H.G.
0.6781.6At1g22200838825unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MOFPS.X.H.G.
0.6781.6At5g58950836012protein kinase family proteinF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MPOFBVAS.X.H.G.
0.6680.1At1g15350838104unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POS.X.H.G.
0.6579.6At4g20380827786zinc finger protein (LSD1)LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challengeS.X.H.G.
0.6478.9At1g54920841930unknown proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;MOPFBS.X.H.G.
0.6478.9At4g20890827837TUB9tubulin 9S.X.H.G.
0.6378.1At1g05960837106bindingF:binding;P:biological_process unknown;C:plasma membrane;MFPBOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
74.699.9GSM154505Arabidopsis hydrated pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
62.499.8GSM154503Arabidopsis desiccated mature pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
61.699.8GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
57.999.8E-MEXP-285-raw-cel-440782725
52.999.8GSM154507Arabidopsis growing pollen tubes rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
49.499.8GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
47.299.8E-MEXP-285-raw-cel-440782791
43.099.8GSM239252Columbia glabrous (C24) wild type stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
37.899.8E-MEXP-1138-raw-cel-1432772938
37.099.7E-MEXP-1138-raw-cel-1432772714
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.817e-87319At4g27130828821eukaryotic translation initiation factor SUI1, putativeF:translation initiation factor activity;P:translational initiation, translation;C:cellular_component unknown;MPFOAVBC.G.S.X.
0.794e-73274At5g54760835566eukaryotic translation initiation factor SUI1, putativeF:translation initiation factor activity;P:translational initiation, translation;C:cellular_component unknown;MPFOAVBC.G.S.X.
0.393e-652At5g54940835585eukaryotic translation initiation factor SUI1, putativeF:translation initiation factor activity;P:translational initiation, translation;C:cellular_component unknown;MPFOABVC.G.S.X.
0.022e-136At1g79030844244DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putativeF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVC.G.S.X.
0.016e-134At5g60930836214chromosome-associated kinesin, putativeF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFBPAVC.G.S.X.
0.016e-134At3g18230821351octicosapeptide/Phox/Bem1p (PB1) domain-containing proteinF:unknown;P:unknown;C:cytosol, nucleus;MOFPBVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.462e-44178Glycine maxGmaAffx.90705.1.A1_s_atCF809069--2e-52At4g27130eukaryotic translation initiation factor SUI1, putativeC.G.S.X.
0.389e-1475Hordeum vulgareContig2583_s_atContig2583--3e-11At4g27130eukaryotic translation initiation factor SUI1, putativeC.G.S.X.
0.281e-1997Oryza sativaOs07g0530100AK069279.1-Tyrosyl-DNA phosphodiesterase family protein9e-14At5g15170tyrosyl-DNA phosphodiesterase-relatedC.G.S.X.
0.422e-44178Populus trichocarpaPtpAffx.31053.2.A1_atCV274692hypothetical protein-1e-35At5g54760eukaryotic translation initiation factor SUI1, putativeC.G.S.X.
0.506e-32137Triticum aestivumTa.746.2.S1_atCA484346--1e-31At1g54290eukaryotic translation initiation factor SUI1, putativeC.G.S.X.
0.442e-44176Vitis vinifera1620220_atCB345823hypothetical protein LOC100243115-7e-46At5g54760eukaryotic translation initiation factor SUI1, putativeC.G.S.X.
0.402e-33141Zea maysZm.355.1.S1_atAF034944.1translation initiation factor1-1e-32At1g54290eukaryotic translation initiation factor SUI1, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006413The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
LGO:0006412The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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