Gene omics information

Query gene ID At1g54160
Gene name NF-YA5 (NUCLEAR FACTOR Y, SUBUNIT A5)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.146.8At1g54160841856NF-YA5 (NUCLEAR FACTOR Y, SUBUNIT A5)Encodes a member of the CCAAT-binding transcription factor (CBF-B/NF-YA) family. Expression is upregulated in response to ABA and drought. This regulation appears to be mediated by MIR169A which is downregulated in response to drought. NFYA5 is a target of MIR169A. Loss of function mutations are hypersensitive to drought.S.X.H.G.
0.4457.2At1g71691843496GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOMS.X.H.G.
0.3338.1At1g04150839249C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVS.X.H.G.
0.2217.5At4g08350826391GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2)F:transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity;P:translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFPBVAS.X.H.G.
0.092.8At5g40490834047RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
186.1100.0GSM133774Lindsey_1-26_torpedo-meristem_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
127.099.9GSM133778Lindsey_1-2_globular-apical_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
102.599.9GSM133770Lindsey_1-22_torpedo-apical_Rep4_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
95.599.9GSM284387Arabidopsis GSUS4bGSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
85.599.9GSM269821WT leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
78.099.9GSM269813WT leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
65.299.8GSM133767Lindsey_1-19_torpedo-basal_Rep4_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
65.299.8GSM311287Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
64.799.8GSM131303AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
63.399.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.302e-40167At3g14020820616NF-YA6 (NUCLEAR FACTOR Y, SUBUNIT A6)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFOC.G.S.X.
0.121e-757At1g17590838335NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFOBC.G.S.X.
0.072e-654At1g72830843614NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3)Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.C.G.S.X.
0.021e-138At2g21540816693SFH3 (SEC14-LIKE 3)F:phosphatidylinositol transporter activity;P:flower development, transport;C:intracellular;MPFOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.061e-552Glycine maxGmaAffx.79944.1.A1_atBU546984--3e-4At3g14020NF-YA6 (NUCLEAR FACTOR Y, SUBUNIT A6)C.G.S.X.
0.132e-1479Hordeum vulgareContig13817_s_atContig13817--4e-14At1g54160NF-YA5 (NUCLEAR FACTOR Y, SUBUNIT A5)C.G.S.X.
0.029e-136Oryza sativaOsAffx.25021.1.S1_at---0C.G.S.X.
0.054e-240Populus trichocarpaPtpAffx.249.205.A1_atCV245539hypothetical protein-3e-3At3g14020NF-YA6 (NUCLEAR FACTOR Y, SUBUNIT A6)C.G.S.X.
0.093e-550Triticum aestivumTa.27574.1.S1_atBT008936.1--4e-5At1g54160NF-YA5 (NUCLEAR FACTOR Y, SUBUNIT A5)C.G.S.X.
0.041e-136Vitis vinifera1613912_atAF220405.1--2e-7At5g12840NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1)C.G.S.X.
0.092e-756Zea maysZm.12864.1.S1_atCA400624nuclear transcription factor Y subunit A-3-1e-11At1g72830NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0032582Any process that stops, prevents or reduces the DNA-dependent transcription of a specific gene or genes.
XGO:0009414A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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