CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g53885

Gene name senescence-associated protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.79 89.1 At1g53885 841826 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.92 96.0 At2g13660 815851 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.91 95.6 At5g26970 832755 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.89 94.6 At2g28820 - - - S.X. H.G.
0.88 94.0 At3g28120 822436 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system S.X. H.G.
0.87 93.5 At5g35270 833481 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.87 93.5 At4g16930 827401 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P S.X. H.G.
0.87 93.5 At4g02910 828141 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.87 93.5 At5g17950 831662 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.86 93.1 At5g12450 831120 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
197.3 100.0 E-MEXP-509-raw-cel-829148561
183.3 100.0 E-MEXP-509-raw-cel-829148632
172.3 100.0 E-MEXP-509-raw-cel-829148597
164.4 100.0 E-MEXP-509-raw-cel-829148492
163.7 99.9 E-MEXP-509-raw-cel-829148772
160.6 99.9 E-MEXP-509-raw-cel-829148738
156.4 99.9 E-MEXP-509-raw-cel-829148456
156.1 99.9 E-MEXP-509-raw-cel-829148525
116.4 99.9 E-MEXP-509-raw-cel-829148808
113.1 99.9 E-MEXP-509-raw-cel-829148420
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
1.00 0 755 At1g53903 6241094 - F:unknown;P:unknown;C:unknown;P C.G. S.X.
0.10 1e-5 50 At1g19200 838503 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.06 3e-3 42 At1g74940 843833 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.04 2e-1 36 At5g47060 834752 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.03 2e-1 36 At5g46850 834729 - F:molecular_function unknown;P:GPI anchor biosynthetic process;C:endoplasmic reticulum membrane;MPFO C.G. S.X.
0.01 2e-1 36 At4g11110 826712 SPA2 (SPA1-RELATED 2) Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. C.G. S.X.
0.03 7e-1 34 At5g15670 831421 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 7e-1 34 At5g46830 834727 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMO C.G. S.X.
0.01 7e-1 34 At5g20990 832224 B73 Involved in molybdenum cofactor (Moco) biosynthesis, inserting Mo into Molybdopterin. sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 7e-8 57 Glycine max GmaAffx.77203.1.S1_at BI970687 - - 1e-7 At1g53903 - C.G. S.X.
0.04 6e+0 30 Hordeum vulgare S0000800150H08F1_x_at S0000800150H08F1 - - 9e-10 At5g35530 40S ribosomal protein S3 (RPS3C) C.G. S.X.
0.04 1e+0 34 Oryza sativa OsAffx.16043.1.S1_at - - - 0 C.G. S.X.
0.08 3e-1 36 Populus trichocarpa PtpAffx.152452.2.A1_a_at CV269086 hypothetical protein - 4e-1 At1g53903 - C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.51421.1.S1_at CA725152 - - 3e+0 At1g53903 - C.G. S.X.
0.04 2e-1 34 Vitis vinifera 1614718_at CB347599 hypothetical protein LOC100264520 - 7e-11 At5g20700 senescence-associated protein-related C.G. S.X.
0.04 5e+0 30 Zea mays Zm.6754.1.A1_at AI396158 hypothetical protein LOC100279965 - 4e-2 At4g36530 hydrolase, alpha/beta fold family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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