Gene omics information

Query gene ID At1g53880
Gene name GTP binding / translation initiation factor
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g53880841825GTP binding / translation initiation factorF:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFPAS.X.H.G.
0.2726.2At5g51980835273WD-40 repeat family protein / zfwd2 protein (ZFWD2), putativeF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFBOPAS.X.H.G.
0.2217.5At2g27450817290NLP1 (NITRILASE-LIKE PROTEIN 1)Encodes N-carbamoylputrescine amidohydrolase that is involved in putrescine and polyamine biosynthesis.S.X.H.G.
0.1710.2At1g34020840299transporter-relatedF:unknown;P:unknown;C:plasma membrane, membrane;PMFOBS.X.H.G.
0.1710.2At5g38630833853ACYB-1Encodes for cytochrome b561.S.X.H.G.
0.1710.2At1g71070843447glycosyltransferase family 14 protein / core-2/I-branching enzyme family proteinF:transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process;C:endomembrane system, membrane;MPBVOS.X.H.G.
0.146.8At5g35730833549EXS family protein / ERD1/XPR1/SYG1 family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFPOS.X.H.G.
0.114.1At3g26400822244EIF4B1member of eIF4B - eukaryotic initiation factor 4BS.X.H.G.
0.092.8At5g05520830435outer membrane OMP85 family proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid;BOMFPVS.X.H.G.
0.082.3At5g11560831028catalyticF:catalytic activity;P:unknown;C:endoplasmic reticulum, plasma membrane, vacuole;MFOBPAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
21.699.6GSM133974Birnbaum_1-4_StageI-1_Rep1_ATH1GSE5749A gene expression map of the Arabidopsis root
19.799.6GSM133975Birnbaum_1-5_StageI-2_Rep2_ATH1GSE5749A gene expression map of the Arabidopsis root
17.899.5GSM133959Fukuda_1-4_2B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
17.099.5GSM133958Fukuda_1-3_2A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
15.299.4GSM133979Birnbaum_1-9_StageII-2_Rep2_ATH1GSE5749A gene expression map of the Arabidopsis root
13.199.4GSM252679Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 22 hrs Taking 70 mm of Stump (4dpg) rep1GSE9996Organ regeneration in plants is independent of stem cell niche activity
12.499.3GSM265419Arabidopsis, root, longitudinal zone 1, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
11.999.3GSM133976Birnbaum_1-6_StageI-3_Rep3_ATH1GSE5749A gene expression map of the Arabidopsis root
11.899.3GSM265411Arabidopsis, whole roots, -Fe, replicate 1GSE10496Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
11.699.3GSM133983Birnbaum_1-13_StageIII-2_Rep2_ATH1GSE5749A gene expression map of the Arabidopsis root
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
1.0003455At1g53900841828GTP binding / translation initiation factorF:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFPAC.G.S.X.
0.408e-140498At1g53870841824unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.408e-140498At1g53890841827unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.426e-82305At1g72340843566eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinF:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAPC.G.S.X.
0.162e-1791At3g14260820646unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.016e-240At3g19070821441cell wall protein-relatedF:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVAC.G.S.X.
0.022e-138At5g13070831146MSF1-like family proteinF:unknown;P:unknown;C:unknown;MFOPC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.311e-37159Glycine maxGma.6702.1.S1_atCD416000--3e-38At1g53900GTP binding / translation initiation factorC.G.S.X.
0.158e-1891Hordeum vulgareContig20274_atContig20274--9e-8At1g72340eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinC.G.S.X.
0.196e-28127Oryza sativaOs12g0497400AK068908.1-Initiation factor 2B family protein2e-13At1g72340eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinC.G.S.X.
0.433e-78293Populus trichocarpaPtpAffx.17912.1.A1_atDN487070hypothetical protein-9e-59At1g72340eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinC.G.S.X.
0.022e-138Triticum aestivumTaAffx.29179.1.S1_atCA648709--7e-5At1g72340eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinC.G.S.X.
0.283e-44178Vitis vinifera1622054_atCF215253similar to GTP binding / translation initiation factor-5e-44At1g53900GTP binding / translation initiation factorC.G.S.X.
0.173e-1479Zea maysZm.12770.1.S1_atCA398540translation initiation factor eIF-2B alpha subunit-1e-5At1g72340eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006413The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
LGO:0044237The chemical reactions and pathways by which individual cells transform chemical substances.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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