Gene omics information

Query gene ID At1g53820
Gene name zinc finger (C3HC4-type RING finger) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5773.8At1g53820841819zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVS.X.H.G.
0.6781.6At3g04220819577disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMOBFAVS.X.H.G.
0.5570.6At5g03270831890unknown proteinF:molecular_function unknown;P:lysine biosynthetic process via diaminopimelate;C:unknown;BOPFMAS.X.H.G.
0.5065.3At1g27820839676CCR4-NOT transcription complex protein, putativeF:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;MPOFS.X.H.G.
0.3338.1At5g38310833813unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
730.3100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
232.4100.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
230.7100.0GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
208.2100.0GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
207.2100.0GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
187.8100.0GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
178.2100.0GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
145.299.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
138.399.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
137.099.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.079e-1581At3g16720820924ATL2RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations.C.G.S.X.
0.048e-961At4g15975827281protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:response to chitin;C:endomembrane system;MPFOVC.G.S.X.
0.111e-757At3g14320820652zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBC.G.S.X.
0.062e-654At5g58580835972ATL63 (ARABIDOPSIS TÓF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBC.G.S.X.
0.072e-654At1g72310843563ATL3Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3).C.G.S.X.
0.017e-342At1g43690840956ubiquitin interaction motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPC.G.S.X.
0.021e-138At2g34980818062SETH1Encodes a putative phosphatidylinositol-glycan synthase subunit C gene. It is involved in the first step of the glycosylphosphatidylinositol (GPI) biosynthetic pathway.C.G.S.X.
0.041e-138At1g70910843430zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.072e-448Glycine maxGmaAffx.42668.1.S1_atBU761245--2e-8At3g16720ATL2C.G.S.X.
0.034e+032Hordeum vulgareHK04L10r_atHK04L10r--1e+0At2g13570NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7)C.G.S.X.
0.024e+034Oryza sativaOs01g0666900NM_191921.1-Ribosomal L18ae protein family protein1e-65At2g3448060S ribosomal protein L18A (RPL18aB)C.G.S.X.
0.073e-344Populus trichocarpaPtpAffx.204793.1.S1_x_atpmrna9444hypothetical protein-2e-8At1g72310ATL3C.G.S.X.
0.031e-138Triticum aestivumTa.25648.3.A1_atBJ308694--4e+0At5g12320ankyrin repeat family proteinC.G.S.X.
0.052e-342Vitis vinifera1622773_atCF605812hypothetical protein LOC100253381-2e-2At4g15975protein binding / zinc ion bindingC.G.S.X.
0.032e-136Zea maysZmAffx.116.1.A1_atAI665610--3e+0At5g4770060S acidic ribosomal protein P1 (RPP1C)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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