Gene omics information

Query gene ID At1g53500
Gene name MUM4 (MUCILAGE-MODIFIED 4)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4558.3At1g53500841785MUM4 (MUCILAGE-MODIFIED 4)encodes a putative NDP-L-rhamnose synthase, an enzyme required for the synthesis of the pectin rhamnogalacturonan I, the major component of Arabidopsis mucilage. Gene is involved in seed coat mucilage cell development. Mutant analyses suggest that MUM4 is required for complete mucilage synthesis, cytoplasmic rearrangement and seed coat development.S.X.H.G.
0.5065.3At1g18150838394ATMPK8ATMPK8,S.X.H.G.
0.4253.9At1g08030837318unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBS.X.H.G.
0.4152.4At1g14560838018mitochondrial substrate carrier family proteinF:transporter activity, binding;P:transport, mitochondrial transport;C:endomembrane system, mitochondrial inner membrane, membrane;MFPOS.X.H.G.
0.4050.8At3g01040821312GAUT13 (Galacturonosyltransferase 13)Encodes a protein with putative galacturonosyltransferase activity.S.X.H.G.
0.4050.8At5g15470831400GAUT14 (Galacturonosyltransferase 14)Encodes a protein with putative galacturonosyltransferase activity.S.X.H.G.
0.3948.4At4g23490828447fringe-related proteinF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;MFPOS.X.H.G.
0.3948.4At3g61590825332HWS (HAWAIIAN SKIRT)F:ubiquitin-protein ligase activity;P:organ development;C:cellular_component unknown;PS.X.H.G.
0.3948.4At2g17530816260protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVAS.X.H.G.
0.3745.0At3g105408202193-phosphoinositide-dependent protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MOPFBVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
737.2100.0GSM311296Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
585.9100.0GSM311295Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
36.599.7E-MEXP-1443-raw-cel-1581869515
36.599.7E-MEXP-1138-raw-cel-1432773290
33.199.7E-MEXP-1138-raw-cel-1432773258
32.699.7GSM131689ATGE_77_EGSE5634AtGenExpress: Developmental series (siliques and seeds)
31.299.7GSM131690ATGE_77_FGSE5634AtGenExpress: Developmental series (siliques and seeds)
30.799.7GSM311294Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
28.999.7GSM131688ATGE_77_DGSE5634AtGenExpress: Developmental series (siliques and seeds)
27.299.7GSM131692ATGE_78_EGSE5634AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.800866At3g14790820707RHM3 (RHAMNOSE BIOSYNTHESIS 3)F:UDP-L-rhamnose synthase activity, catalytic activity;P:UDP-rhamnose biosynthetic process, nucleotide-sugar metabolic process;C:soluble fraction;OBMPAFVC.G.S.X.
0.730658At1g78570844193RHM1 (RHAMNOSE BIOSYNTHESIS 1)Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose, a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha. The dehydrogenase domain of RHM1 was shown to catalyze the conversion of UDP-D-Glc to the reaction intermediate UDP-4-keto-6-deoxy-D-Glc using recombinant protein assay but the activity of the full-length protein was not determined as it could not be expressed in E. coli.C.G.S.X.
0.242e-20101At1g63000842603NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE)F:UDP-4-keto-rhamnose-4-keto-reductase activity, dTDP-4-dehydrorhamnose reductase activity, UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity, dTDP-4-dehydrorhamnose 3,5-epimerase activity;P:dTDP-rhamnose biosynthetic process, UDP-rhamnose biosynthetic process;C:soluble fraction, plasma membrane;BOPAFMVC.G.S.X.
0.012e-242At5g60230836145SEN2 (splicing endonuclease 2)putative subunit of tRNA splicing endonucleaseC.G.S.X.
0.011e+036At5g65970836727MLO10 (MILDEW RESISTANCE LOCUS O 10)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO10 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO8, and AtMLO9. The gene is expressed in root and cotyledon vascular system, in root-shoot junction and lateral root primordia and in developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(sC.G.S.X.
0.011e+036At5g22090832270unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOPFBVC.G.S.X.
0.011e+036At5g39250833921F-box family proteinF:molecular_function unknown;P:unknown;C:unknown;PMOC.G.S.X.
0.011e+036At4g168076241030unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.476e-43176Glycine maxGma.7572.1.S1_atBI970498--5e-77At1g78570RHM1 (RHAMNOSE BIOSYNTHESIS 1)C.G.S.X.
0.371e-50200Hordeum vulgareContig4348_atContig4348--1e-84At1g78570RHM1 (RHAMNOSE BIOSYNTHESIS 1)C.G.S.X.
0.373e-58228Oryza sativaOs03g0278200AK103544.1-NAD-dependent epimerase/dehydratase family protein6e-83At1g78570RHM1 (RHAMNOSE BIOSYNTHESIS 1)C.G.S.X.
0.436e-40167Populus trichocarpaPtpAffx.5688.1.S1_atCV238865hypothetical protein-9e-72At1g78570RHM1 (RHAMNOSE BIOSYNTHESIS 1)C.G.S.X.
0.357e-48192Triticum aestivumTa.28218.1.S1_a_atCK157558--2e-58At1g78570RHM1 (RHAMNOSE BIOSYNTHESIS 1)C.G.S.X.
0.427e-73274Vitis vinifera1614216_atCF512284hypothetical protein LOC100260586-2e-72At1g53500MUM4 (MUCILAGE-MODIFIED 4)C.G.S.X.
0.321e-1377Zea maysZm.13518.1.A1_atCO522595hypothetical protein LOC100191391-3e-43At1g78570RHM1 (RHAMNOSE BIOSYNTHESIS 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010253The chemical reactions and pathways resulting in the formation of UDP-L-rhamnose, a substance composed of rhamnose in glycosidic linkage with uridine diphosphate.
XGO:0010214The process whose specific outcome is the progression of the seed coat over time, from its formation to the mature structure.
XGO:0010192The chemical reactions and pathways resulting in the formation of mucilage, a gelatinous substance secreted by plants.
CGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00520Link to KEGG PATHWAYAmino sugar and nucleotide sugar metabolism
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