Gene omics information

Query gene ID At1g53450
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g53450841780unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.3338.1At3g22104821773phototropic-responsive NPH3 protein-relatedF:protein binding, signal transducer activity;P:response to light stimulus;C:unknown;PMOBFS.X.H.G.
0.2930.3At4g19070827645cadmium-responsive protein / cadmium induced protein (AS8)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;VPOMBAS.X.H.G.
0.146.8At1g78010844136tRNA modification GTPase, putativeF:GTP binding, GTPase activity;P:small GTPase mediated signal transduction, tRNA modification;C:intracellular;BOMAFPS.X.H.G.
0.061.4At5g02250830864EMB2730 (EMBRYO DEFECTIVE 2730)Encodes a exoribonuclease involved in rRNA processing in mitochondria and chloroplasts.Loss of function mutations are pale green and require supplementation with sucrose for germination and early development. Plants are pale green due to defects in chloroplast biogenesis.S.X.H.G.
0.020.4At1g03000839315PEX6 (PEROXIN 6)Encodes an apparent ATPase similar to yeast and human protein required for peroxisomal biogenesis. May facilitate recycling of PEX5, the peroxisomal matrix protein receptor, and thereby promote peroxisomal matrix protein import.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
69.399.9GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
67.499.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
59.299.8GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
32.299.7GSM133118RIKEN-YAMAUCHI1BGSE5687AtGenExpress: Different temperature treatment of seeds
26.799.7GSM133763Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
25.599.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
25.099.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
23.899.6GSM131106Broadley_1-4_A4-Bo-P3-phosphate-starved_Rep3_ATH1GSE5614Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
23.399.6GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.683e-151535At3g14830820712unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.012e-138At3g28540822484AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BOMFPAVC.G.S.X.
0.027e-136At4g14380827082unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POMC.G.S.X.
0.017e-136At4g36150829772disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFAVC.G.S.X.
0.017e-136At3g02760820930ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide bindingF:histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast, cytoplasm;OBMFAPC.G.S.X.
0.027e-136At1g17330838304metal-dependent phosphohydrolase HD domain-containing protein-relatedF:catalytic activity;P:biological_process unknown;C:cellular_component unknown;BOFAPVC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.284e-34147Glycine maxGma.3635.1.S1_atCA852866--2e-34At1g53450unknown proteinC.G.S.X.
0.049e-548Hordeum vulgareContig7665_atContig7665--5e-9At3g14830unknown proteinC.G.S.X.
0.072e-1585Oryza sativaOs01g0729900AK065503.1-Conserved hypothetical protein2e-15At1g53450unknown proteinC.G.S.X.
0.137e-1789Populus trichocarpaPtp.2271.1.S1_s_atCV240961hypothetical protein-2e-17At1g53450unknown proteinC.G.S.X.
0.021e+132Triticum aestivumTaAffx.92142.1.S1_atBJ279272--4e+0At3g59680unknown proteinC.G.S.X.
0.152e-1065Vitis vinifera1613440_atCB976741hypothetical protein LOC100252018-4e-10At1g53450unknown proteinC.G.S.X.
0.139e-1477Zea maysZm.17995.1.A1_atCD999136hypothetical protein LOC100276949-2e-13At1g53450unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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