CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g53450

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g53450 841780 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.33 38.1 At3g22104 821773 phototropic-responsive NPH3 protein-related F:protein binding, signal transducer activity;P:response to light stimulus;C:unknown;PMOBF S.X. H.G.
0.29 30.3 At4g19070 827645 cadmium-responsive protein / cadmium induced protein (AS8) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;VPOMBA S.X. H.G.
0.14 6.8 At1g78010 844136 tRNA modification GTPase, putative F:GTP binding, GTPase activity;P:small GTPase mediated signal transduction, tRNA modification;C:intracellular;BOMAFP S.X. H.G.
0.06 1.4 At5g02250 830864 EMB2730 (EMBRYO DEFECTIVE 2730) Encodes a exoribonuclease involved in rRNA processing in mitochondria and chloroplasts.Loss of function mutations are pale green and require supplementation with sucrose for germination and early development. Plants are pale green due to defects in chloroplast biogenesis. S.X. H.G.
0.02 0.4 At1g03000 839315 PEX6 (PEROXIN 6) Encodes an apparent ATPase similar to yeast and human protein required for peroxisomal biogenesis. May facilitate recycling of PEX5, the peroxisomal matrix protein receptor, and thereby promote peroxisomal matrix protein import. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
69.3 99.9 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
67.4 99.8 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
59.2 99.8 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
32.2 99.7 GSM133118 RIKEN-YAMAUCHI1B GSE5687 AtGenExpress: Different temperature treatment of seeds
26.7 99.7 GSM133763 Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
25.5 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
25.0 99.6 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
24.2 99.6 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.8 99.6 GSM131106 Broadley_1-4_A4-Bo-P3-phosphate-starved_Rep3_ATH1 GSE5614 Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
23.3 99.6 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.68 3e-151 535 At3g14830 820712 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e-1 38 At3g28540 822484 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BOMFPAV C.G. S.X.
0.02 7e-1 36 At4g14380 827082 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POM C.G. S.X.
0.01 7e-1 36 At4g36150 829772 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFAV C.G. S.X.
0.01 7e-1 36 At3g02760 820930 ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding F:histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast, cytoplasm;OBMFAP C.G. S.X.
0.02 7e-1 36 At1g17330 838304 metal-dependent phosphohydrolase HD domain-containing protein-related F:catalytic activity;P:biological_process unknown;C:cellular_component unknown;BOFAPV C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 4e-34 147 Glycine max Gma.3635.1.S1_at CA852866 - - 2e-34 At1g53450 unknown protein C.G. S.X.
0.04 9e-5 48 Hordeum vulgare Contig7665_at Contig7665 - - 5e-9 At3g14830 unknown protein C.G. S.X.
0.07 2e-15 85 Oryza sativa Os01g0729900 AK065503.1 - Conserved hypothetical protein 2e-15 At1g53450 unknown protein C.G. S.X.
0.13 7e-17 89 Populus trichocarpa Ptp.2271.1.S1_s_at CV240961 hypothetical protein - 2e-17 At1g53450 unknown protein C.G. S.X.
0.02 1e+1 32 Triticum aestivum TaAffx.92142.1.S1_at BJ279272 - - 4e+0 At3g59680 unknown protein C.G. S.X.
0.15 2e-10 65 Vitis vinifera 1613440_at CB976741 hypothetical protein LOC100252018 - 4e-10 At1g53450 unknown protein C.G. S.X.
0.13 9e-14 77 Zea mays Zm.17995.1.A1_at CD999136 hypothetical protein LOC100276949 - 2e-13 At1g53450 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage