Gene omics information

Query gene ID At1g53380
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g53380841774unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOS.X.H.G.
0.4659.8At4g22140828303DNA binding / protein binding / zinc ion bindingF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;MPFOS.X.H.G.
0.4152.4At5g51660835240CPSF160F:nucleic acid binding;P:mRNA cleavage, mRNA polyadenylation;C:nucleus;MFPOS.X.H.G.
0.3643.6At1g14510838013AL7 (ALFIN-LIKE 7)AL7 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.S.X.H.G.
0.3439.8At2g28380817386DRB2 (DSRNA-BINDING PROTEIN 2)Encodes a cytoplasmic dsRNA-binding protein.S.X.H.G.
0.3338.1At5g62390836360ATBAG7 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 7)A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.S.X.H.G.
0.3133.8At5g63440836463unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFS.X.H.G.
0.3032.1At5g02530831923RNA and export factor-binding protein, putativeF:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFOPBVAS.X.H.G.
0.3032.1At4g32551829390LUG (LEUNIG)LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors.S.X.H.G.
0.2930.3At1g18450838425ATARP4Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes, involved in chromatin-mediated gene regulation. Phenotype of the arp4-1 mutant allele revealed partial sterility due to defects in anther development. Targeting the distinct, 3' UTR of AtARP4 transcripts with RNA interference caused a drastic reduction in the level of AtARP4 protein expression, and resulted in strong pleiotropic phenotypes such as altered organization of plant organs, early flowering, delayed flower senescence and high levels of sterility. Western blot analysis and immunolabelling demonstrated a clear correlation between reductions in the level of AtARP4 expression and severity of the phenotypes.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
15.099.4GSM242962Mock day 7 (day7E2)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
11.899.3GSM242961Mock day 7 (day7E1)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.618e-87321At3g14870820716unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POMAFBC.G.S.X.
0.042e-448At1g29300839804UNE1 (unfertilized embryo sac 1)F:unknown;P:double fertilization forming a zygote and endosperm;C:unknown;PBOMFC.G.S.X.
0.031e-242At1g144556240862unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POFMC.G.S.X.
0.014e-240At5g56380835739F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.014e-240At3g50660824229DWF4 (DWARF 4)Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.029e-136Glycine maxGmaAffx.14389.1.S1_atBM270083--2e-1At2g32580unknown proteinC.G.S.X.
0.023e-136Hordeum vulgareContig12510_atContig12510--4e-1At5g26790unknown proteinC.G.S.X.
0.021e+036Oryza sativaOs04g0386300AK064720.1-Conserved hypothetical protein6e+0At3g27210unknown proteinC.G.S.X.
0.036e-240Populus trichocarpaPtpAffx.102490.1.S1_atAJ770372hypothetical protein-1e-1At3g14870unknown proteinC.G.S.X.
0.022e-138Triticum aestivumTaAffx.57864.1.S1_atCA624427--4e+0At5g41680protein kinase family proteinC.G.S.X.
0.028e-134Vitis vinifera1608951_atCF515796--9e-1At5g46090unknown proteinC.G.S.X.
0.021e+034Zea maysZmAffx.701.1.A1_atAI737983hypothetical protein LOC100274433-2e-1At1g03170unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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