CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g53380

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g53380 841774 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO S.X. H.G.
0.46 59.8 At4g22140 828303 DNA binding / protein binding / zinc ion binding F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;MPFO S.X. H.G.
0.41 52.4 At5g51660 835240 CPSF160 F:nucleic acid binding;P:mRNA cleavage, mRNA polyadenylation;C:nucleus;MFPO S.X. H.G.
0.36 43.6 At1g14510 838013 AL7 (ALFIN-LIKE 7) AL7 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA. S.X. H.G.
0.34 39.8 At2g28380 817386 DRB2 (DSRNA-BINDING PROTEIN 2) Encodes a cytoplasmic dsRNA-binding protein. S.X. H.G.
0.33 38.1 At5g62390 836360 ATBAG7 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 7) A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development. S.X. H.G.
0.31 33.8 At5g63440 836463 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.30 32.1 At5g02530 831923 RNA and export factor-binding protein, putative F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFOPBVA S.X. H.G.
0.30 32.1 At4g32551 829390 LUG (LEUNIG) LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. S.X. H.G.
0.29 30.3 At1g18450 838425 ATARP4 Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes, involved in chromatin-mediated gene regulation. Phenotype of the arp4-1 mutant allele revealed partial sterility due to defects in anther development. Targeting the distinct, 3' UTR of AtARP4 transcripts with RNA interference caused a drastic reduction in the level of AtARP4 protein expression, and resulted in strong pleiotropic phenotypes such as altered organization of plant organs, early flowering, delayed flower senescence and high levels of sterility. Western blot analysis and immunolabelling demonstrated a clear correlation between reductions in the level of AtARP4 expression and severity of the phenotypes. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.4 99.5 E-MEXP-682-raw-cel-922397594
15.0 99.4 GSM242962 Mock day 7 (day7E2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
14.5 99.4 E-MEXP-682-raw-cel-922397611
11.9 99.3 E-MEXP-682-raw-cel-922397713
11.8 99.3 GSM242961 Mock day 7 (day7E1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
11.4 99.3 E-MEXP-682-raw-cel-922397645
11.0 99.2 E-MEXP-682-raw-cel-922397696
10.9 99.2 E-MEXP-682-raw-cel-922397662
10.7 99.2 E-MEXP-682-raw-cel-922397560
10.7 99.2 E-TABM-19-raw-cel-489757149
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.61 8e-87 321 At3g14870 820716 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POMAFB C.G. S.X.
0.04 2e-4 48 At1g29300 839804 UNE1 (unfertilized embryo sac 1) F:unknown;P:double fertilization forming a zygote and endosperm;C:unknown;PBOMF C.G. S.X.
0.03 1e-2 42 At1g14455 6240862 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POFM C.G. S.X.
0.01 4e-2 40 At5g56380 835739 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 4e-2 40 At3g50660 824229 DWF4 (DWARF 4) Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-1 36 Glycine max GmaAffx.14389.1.S1_at BM270083 - - 2e-1 At2g32580 unknown protein C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig12510_at Contig12510 - - 4e-1 At5g26790 unknown protein C.G. S.X.
0.02 1e+0 36 Oryza sativa Os04g0386300 AK064720.1 - Conserved hypothetical protein 6e+0 At3g27210 unknown protein C.G. S.X.
0.03 6e-2 40 Populus trichocarpa PtpAffx.102490.1.S1_at AJ770372 hypothetical protein - 1e-1 At3g14870 unknown protein C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.57864.1.S1_at CA624427 - - 4e+0 At5g41680 protein kinase family protein C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1608951_at CF515796 - - 9e-1 At5g46090 unknown protein C.G. S.X.
0.02 1e+0 34 Zea mays ZmAffx.701.1.A1_at AI737983 hypothetical protein LOC100274433 - 2e-1 At1g03170 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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