Gene omics information

Query gene ID At1g53270
Gene name ABC transporter family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5368.6At1g53270841761ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVS.X.H.G.
0.8391.4At5g13580831202ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:membrane;BOMAFPVS.X.H.G.
0.8391.4At5g41040834106transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBOS.X.H.G.
0.8089.8At2g48140819426EDA4 (embryo sac development arrest 4)F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFVS.X.H.G.
0.8089.8At5g09530830812hydroxyproline-rich glycoprotein family proteinF:unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAS.X.H.G.
0.7989.1At5g09520830811hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVAS.X.H.G.
0.7888.6At2g48130819425protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;PBOMS.X.H.G.
0.7888.6At4g36610829813hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:biological_process unknown;C:endomembrane system;BOMPFAS.X.H.G.
0.7586.9At2g43390818940unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7284.8At2g22510816784hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMBVFAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
158.099.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
152.299.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
145.799.9E-ATMX-1-raw-cel-1112746154
136.799.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
134.799.9GSM184846Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2GSE7639Expression analysis of root developmental zones after treatment with salt
133.799.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
126.199.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
118.599.9GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
115.499.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
115.499.9GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-448At2g39350818520ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:plasma membrane;BOMAFPVC.G.S.X.
0.011e-242At4g05360825884zinc knuckle (CCHC-type) family proteinF:zinc ion binding, nucleic acid binding;P:unknown;C:nuclear chromosome;POFMBC.G.S.X.
0.012e-138At5g13580831202ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:membrane;BOMAFPVC.G.S.X.
0.012e-138At4g08630826428unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMFPBVC.G.S.X.
0.019e-136At5g06530830541ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:plasma membrane;BOMFAPVC.G.S.X.
0.019e-136At5g37690833748GDSL-motif lipase/hydrolase family proteinF:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOMC.G.S.X.
0.029e-136At5g19410832061ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast, membrane;BOMFAPVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+036Glycine maxGmaAffx.56257.1.S1_atBU760552--3e-1At1g15385unknown proteinC.G.S.X.
0.027e+032Hordeum vulgareHV_CEb0023O04r2_atHV_CEb0023O04r2--1e+0At3g19390cysteine proteinase, putative / thiol protease, putativeC.G.S.X.
0.022e+036Oryza sativaOsAffx.4816.1.S1_at---0C.G.S.X.
0.182e-20101Populus trichocarpaPtpAffx.216534.1.S1_atpmrna31370white-brown-complex ABC transporter family-2e-20At1g53270ABC transporter family proteinC.G.S.X.
0.022e-138Triticum aestivumTaAffx.57374.1.S1_atCA630420--3e-1At2g20670unknown proteinC.G.S.X.
0.024e+032Vitis vinifera1622870_atCB348576hypothetical protein LOC100245835-3e-13At4g25750ABC transporter family proteinC.G.S.X.
0.022e+034Zea maysZmAffx.536.1.A1_atAI711796--1e+1At5g65430GRF8 (GENERAL REGULATORY FACTOR 8)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006810The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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