CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g53230

Gene name TCP3

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g53230 841756 TCP3 Encodes a member of a recently identified plant transcription factor family that includes Teosinte branched 1, Cycloidea 1, and proliferating cell nuclear antigen (PCNA) factors, PCF1 and 2. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation. S.X. H.G.
0.54 69.5 At2g41940 818794 ZFP8 (ZINC FINGER PROTEIN 8) Encodes a zinc finger protein containing only a single zinc finger. S.X. H.G.
0.50 65.3 At3g47860 823942 apolipoprotein D-related F:transporter activity, binding;P:transport;C:chloroplast thylakoid membrane, chloroplast;MPOB S.X. H.G.
0.49 63.5 At5g52780 835355 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;BPO S.X. H.G.
0.49 63.5 At5g55710 835665 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBP S.X. H.G.
0.49 63.5 At1g44920 841058 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPAO S.X. H.G.
0.46 59.8 At3g55250 824691 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, chloroplast, nucleus;P S.X. H.G.
0.46 59.8 At1g30210 839901 TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24) TCP family protein involved in heterochronic regulation of leaf differentiation. S.X. H.G.
0.46 59.8 At3g09050 820058 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;MPOBAF S.X. H.G.
0.46 59.8 At1g73655 843700 FK506 binding / peptidyl-prolyl cis-trans isomerase F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast;BOPMF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.2 99.5 GSM133047 2789 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
16.2 99.5 GSM133044 2786 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
15.0 99.4 GSM133040 2784 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
14.8 99.4 GSM133049 2792 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
14.4 99.4 GSM133050 2791 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
14.3 99.4 GSM133043 2785 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
13.8 99.4 GSM133048 2790 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
12.7 99.3 E-MEXP-1304-raw-cel-1530618613
12.7 99.3 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
12.3 99.3 GSM133042 2527 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.40 1e-48 194 At3g15030 820732 TCP4 (TCP family transcription factor 4) Arabidopsis thaliana TCP family transcription factor. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation. C.G. S.X.
0.07 5e-20 99 At2g31070 817659 TCP10 (TCP DOMAIN PROTEIN 10) TCP family protein involved in heterchronic regulation of leaf differentiation. C.G. S.X.
0.04 4e-5 50 At1g30210 839901 TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24) TCP family protein involved in heterochronic regulation of leaf differentiation. C.G. S.X.
0.02 4e-2 40 At5g60970 836218 TCP5 (TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 5) TCP gene involved in heterochronic control of leaf differentiation. C.G. S.X.
0.03 1e-1 38 At3g11730 820345 ATFP8 Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. It has also been identified as an isoprenylated protein. C.G. S.X.
0.01 6e-1 36 At5g10930 830960 CIPK5 (CBL-INTERACTING PROTEIN KINASE 5) Encodes CBL-interacting protein kinase 5 (CIPK5). C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 2e-4 48 Glycine max GmaAffx.13162.1.S1_at BG044834 - - 5e-5 At1g53230 TCP3 C.G. S.X.
0.02 7e-2 38 Hordeum vulgare Contig18130_at Contig18130 - - 3e-2 At2g37600 60S ribosomal protein L36 (RPL36A) C.G. S.X.
0.02 3e-1 38 Oryza sativa Os08g0102000 AK068156.1 - GCN5-related N-acetyltransferase domain containingprotein 2e+0 At4g01883 - C.G. S.X.
0.14 6e-11 69 Populus trichocarpa PtpAffx.209858.1.S1_s_at pmrna19432 hypothetical protein - 3e-21 At3g15030 TCP4 (TCP family transcription factor 4) C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.94803.1.S1_at CA594522 - - 4e-1 At3g01950 unknown protein C.G. S.X.
0.04 8e-10 63 Vitis vinifera 1611318_at CB002340 - - 1e-9 At1g53230 TCP3 C.G. S.X.
0.02 1e+0 34 Zea mays ZmAffx.783.1.S1_at AI745854 - - 8e-7 At1g51730 RWD domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009965 The process by which the anatomical structures of the leaf are generated and organized. Morphogenesis pertains to the creation of form.
X GO:0030154 The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate.
X GO:0045962 Any process that increases the rate, frequency or extent of the progression an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition at a consistent predetermined time point during its development.
S GO:0048366 The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure.
S GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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