Gene omics information

Query gene ID At1g52810
Gene name 2-oxoglutarate-dependent dioxygenase-related
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6680.1At1g528108417142-oxoglutarate-dependent dioxygenase-relatedF:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFMS.X.H.G.
0.7586.9At3g58860825055F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7184.2At3g43900823506unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7083.5At5g46310834674WRKY family transcription factorF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;FPS.X.H.G.
0.7083.5At1g78720844208protein transport protein sec61, putativeF:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein secretion, protein transport;C:membrane;BOMAFPS.X.H.G.
0.7083.5At4g17580827475Bax inhibitor-1 family protein / BI-1 family proteinF:molecular_function unknown;P:negative regulation of apoptosis, regulation of apoptosis, apoptosis;C:integral to membrane;BMOFPVS.X.H.G.
0.6982.9At2g35460818111harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinF:unknown;P:unknown;C:cellular_component unknown;PS.X.H.G.
0.6882.2At5g62160836336AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)member of Fe(II) transporter isolog familyS.X.H.G.
0.6781.6At1g28220839716ATPUP3Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.S.X.H.G.
0.6680.1At4g31710829299ATGLR2.4member of Putative ligand-gated ion channel subunit familyS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
228.3100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
194.7100.0GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
104.599.9GSM133819Yang_1-4_old-pod_Rep2_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
93.299.9GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
73.199.9GSM176879AWP_Control_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
62.699.8GSM133722Deeken_A-2-Deeke-Inf_SLD_REP2GSE5725Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
55.699.8GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
48.099.8GSM131105Broadley_1-3_A3-Bo-P2-phosphate-starved_Rep2_ATH1GSE5614Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
48.099.8GSM133821Yang_1-6_old-pod_Rep3_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
46.999.8GSM260957A5-LLOYD-CON_REP2GSE10326Transcriptome analysis of pho3
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.081e-757At1g28030839696oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:2-oxoglutarate-dependent dioxygenase activity;P:biological_process unknown;C:cellular_component unknown;POBFMC.G.S.X.
0.033e-240At1g528208417152-oxoglutarate-dependent dioxygenase, putativeF:oxidoreductase activity;P:unknown;C:unknown;POBFMC.G.S.X.
0.101e-138At4g03070828100AOP1Encodes a possible 2-oxoglutarate-dependent dioxygenase that is involved in glucosinolate biosynthesis. The gene is expressed in all ecotypes examined but the enzymatic activity has not been determined experimentally. In Col, there is one copy of this gene (aka AOP1.1) but Ler contains two copies, AOP1.1 and a tightly linked AOP1.2.C.G.S.X.
0.021e-138At3g13800820592metallo-beta-lactamase family proteinF:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast;OBPAFMC.G.S.X.
0.014e-136At5g41620834164-F:molecular_function unknown;P:biological_process unknown;C:chloroplast, plasma membrane;OMBFPAC.G.S.X.
0.034e-136At2g01200814648IAA32 (INDOLE-3-ACETIC ACID INDUCIBLE 32)Belongs to auxin inducible gene family.C.G.S.X.
0.012e+034At5g23700832435unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+034Glycine maxGmaAffx.75884.1.S1_atAI460931--2e-23At1g71800cleavage stimulation factor, putativeC.G.S.X.
0.021e+130Hordeum vulgareHVSMEm0021F22r2_atHVSMEm0021F22r2--7e-2At3g52590UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)C.G.S.X.
0.033e+034Oryza sativaOsAffx.8748.1.A1_at---0C.G.S.X.
0.026e-136Populus trichocarpaPtpAffx.200510.1.S1_atpmrna10322-oxoglutarate-dependent dioxygenase-2e-6At1g528202-oxoglutarate-dependent dioxygenase, putativeC.G.S.X.
0.032e+034Triticum aestivumTa.13203.2.S1_atBJ255501--3e-1At3g01700AGP11C.G.S.X.
0.025e-134Vitis vinifera1616383_atCF609704hypothetical protein LOC100248193-9e-54At1g08200AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2)C.G.S.X.
0.023e+032Zea maysZmAffx.1433.1.S1_at11990232-18ATP synthase B chain-7e-45Atcg00130-C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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