CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g52770

Gene name phototropic-responsive NPH3 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g52770 841710 phototropic-responsive NPH3 family protein F:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P S.X. H.G.
0.25 22.6 At1g49750 841398 leucine-rich repeat family protein F:protein binding;P:unknown;C:chloroplast;MPBOFVA S.X. H.G.
0.02 0.4 At1g73655 843700 FK506 binding / peptidyl-prolyl cis-trans isomerase F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast;BOPMF S.X. H.G.
0.02 0.4 At1g64150 842719 unknown protein F:unknown;P:unknown;C:chloroplast, membrane;BOMFPA S.X. H.G.
0.01 0.2 At1g67660 843091 DNA binding / nuclease F:DNA binding, nuclease activity;P:biological_process unknown;C:unknown;OBPVM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
68.9 99.9 E-MEXP-809-raw-cel-1123684141
60.4 99.8 GSM134359 St.Clair_1-20_361_Cvi-1_0.02%-silwet_Rep2_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
55.5 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.4 99.8 GSM133827 Walters_A-06-Kruger-WH3_REP3 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
50.3 99.8 GSM133826 Walters_A-05-Kruger-WH2_REP2 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
47.6 99.8 GSM134377 St.Clair_1-38_332_Est_0.02%-silwet_Rep2_ATH1 GSE5754 Expression Level Polymorphism Project (ELP) - Est
46.8 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.3 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.8 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.7 99.8 GSM134358 St.Clair_1-19_336_Cvi-1_0.02%-silwet_Rep1_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.39 9e-22 105 At3g15570 820797 phototropic-responsive NPH3 family protein F:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P C.G. S.X.
0.01 1e-2 42 At5g42270 834232 VAR1 (VARIEGATED 1) VAR1 contains a conserved motif for ATPase and a metalloprotease characteristic to FtsH proteins, and is targeted into chloroplasts. A VAR1-fusion protein synthesized in vitro exhibited ATPase activity and partial metalloprotease activity. This protein is located to the thylakoid membrane and forms a complex with VAR2. FtsH1 (VAR1) and FtsH5 are interchangeable in thylakoid membranes. C.G. S.X.
0.01 1e-2 42 At1g19940 838583 AtGH9B5 (Arabidopsis thaliana Glycosyl Hydrolase 9B5) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF C.G. S.X.
0.03 4e-2 40 At1g67900 843118 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:cellular_component unknown;PO C.G. S.X.
0.01 2e-1 38 At4g36030 829759 ARO3 (ARMADILLO REPEAT ONLY 3) Armadillo repeat protein. One of a family of four in Arabidopsis. Expressed in vegetative tissues, anthers and ovules. C.G. S.X.
0.01 7e-1 36 At5g04670 830344 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB C.G. S.X.
0.01 7e-1 36 At2g18980 816415 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM C.G. S.X.
0.01 3e+0 34 At5g23890 832454 - F:unknown;P:unknown;C:mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope;MOBFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 1e-9 65 Glycine max GmaAffx.85293.1.S1_at BE190863 - - 5e-10 At1g52770 phototropic-responsive NPH3 family protein C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig4899_s_at Contig4899 - - 2e-2 At2g01140 fructose-bisphosphate aldolase, putative C.G. S.X.
0.02 1e+0 36 Oryza sativa OsAffx.14491.1.S1_at - - - 0 C.G. S.X.
0.12 2e-17 91 Populus trichocarpa PtpAffx.202918.1.S1_at pmrna5777 hypothetical protein - 1e-17 At1g52770 phototropic-responsive NPH3 family protein C.G. S.X.
0.02 1e-2 42 Triticum aestivum Ta.6817.2.S1_at CA608920 - - 1e+0 At3g50373 unknown protein C.G. S.X.
0.04 3e+0 32 Vitis vinifera 1618691_at CF372335 - - 4e-3 At3g60800 zinc finger (DHHC type) family protein C.G. S.X.
0.02 1e+0 34 Zea mays Zm.3258.1.A1_at AY111069.1 - - 1e+0 At2g40510 40S ribosomal protein S26 (RPS26A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009416 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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