CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g52680

Gene name late embryogenesis abundant protein-related / LEA protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.64 78.9 At1g52680 841700 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
1.00 100.0 At1g04670 839451 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PAF S.X. H.G.
0.97 97.6 At2g29790 817529 - Encodes a Maternally expressed gene (MEG) family protein [pseudogene] S.X. H.G.
0.97 97.6 At2g28355 817383 LCR5 (Low-molecular-weight cysteine-rich 5) F:molecular_function unknown;P:defense response;C:endomembrane system;P S.X. H.G.
0.95 97.0 At5g46940 834740 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.95 97.0 At2g33690 817934 late embryogenesis abundant protein, putative / LEA protein, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.93 96.4 At3g12660 820446 FLA14 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14 PRECURSOR) fasciclin-like arabinogalactan-protein, family (FLA14) S.X. H.G.
0.93 96.4 At3g21970 821756 receptor-like protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.93 96.4 At3g51070 824271 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:unknown;MOBFPVA S.X. H.G.
0.93 96.4 At3g53080 824474 galactose-binding lectin family protein F:sugar binding, beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;POMB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
452.2 100.0 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
402.0 100.0 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
233.1 100.0 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
202.2 100.0 GSM106969 opr3_OPDA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
159.1 99.9 GSM106913 opr3_JA_8 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
148.6 99.9 GSM106973 ws_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
147.5 99.9 GSM106916 opr3_JA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
138.7 99.9 GSM131592 ATGE_36_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
138.1 99.9 GSM131591 ATGE_36_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
130.9 99.9 GSM106915 opr3_JA_22 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-2 38 At4g23310 828430 receptor-like protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:defense response;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 4e-2 38 At1g63210 842626 RNA binding / hydrolase, acting on ester bonds / protein binding / transcription elongation regulator F:transcription elongation regulator activity, protein binding, hydrolase activity, acting on ester bonds, RNA binding;P:regulation of transcription from RNA polymerase II promoter, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:unknown;BMOFPA C.G. S.X.
0.04 2e-1 36 At2g36920 818266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.03 6e-1 34 At1g49470 841370 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM C.G. S.X.
0.01 3e+0 32 At5g14820 831334 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA C.G. S.X.
0.03 3e+0 32 At5g64680 836589 unknown protein F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOPF C.G. S.X.
0.01 3e+0 32 At4g38600 830017 KAK (KAKTUS) encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. C.G. S.X.
0.02 3e+0 32 At4g10490 826641 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:cellular_component unknown;POBFM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-5 50 Glycine max Gma.17794.1.S1_at AI939092 - - 3e-3 At5g53820 unknown protein C.G. S.X.
0.05 5e+0 30 Hordeum vulgare rbaal37j13_s_at rbaal37j13 - - 2e+0 At1g72360 ethylene-responsive element-binding protein, putative C.G. S.X.
0.06 1e+0 34 Oryza sativa OsAffx.9671.1.S1_at - - - 0 C.G. S.X.
0.10 6e-11 67 Populus trichocarpa PtpAffx.3148.1.S1_at BU878906 hypothetical protein - 9e-11 At1g52680 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.04 1e+1 30 Triticum aestivum TaAffx.7928.1.S1_at CA643720 - - 3e-9 At3g25640 unknown protein C.G. S.X.
0.08 8e-1 32 Vitis vinifera 1608715_at CB977234 hypothetical protein LOC100258268 - 4e+0 At5g10280 ATMYB92 (MYB DOMAIN PROTEIN 92) C.G. S.X.
0.07 1e+0 32 Zea mays ZmAffx.38.1.A1_at AI657470 - - 2e+0 At4g04423 endo-1,3(4)-beta-glucanase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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