Gene omics information

Query gene ID At1g52620
Gene name pentatricopeptide (PPR) repeat-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7385.5At1g52620841694pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAS.X.H.G.
0.8693.1At1g25360839121pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFAS.X.H.G.
0.7385.5At3g49740824136pentatricopeptide (PPR) repeat-containing proteinF:binding;P:biological_process unknown;C:unknown;POFMBS.X.H.G.
0.3643.6At3g06600819839unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.2319.3At1g32610840156hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOVBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
184.0100.0GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
127.499.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
121.599.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
114.499.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
110.599.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
107.099.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
103.499.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
101.899.9GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
100.999.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
98.399.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-242At5g60150836137unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPAVC.G.S.X.
0.012e-242At4g37560829911formamidase, putative / formamide amidohydrolase, putativeF:formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;P:metabolic process;C:cellular_component unknown;BOFAPC.G.S.X.
0.018e-240At5g16860831549pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBC.G.S.X.
0.028e-240At1g63070842610pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAC.G.S.X.
0.018e-240At1g62910842592pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:unknown;POMFBAC.G.S.X.
0.013e-138At4g20770827825pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBC.G.S.X.
0.013e-138At4g37170829871pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBC.G.S.X.
0.013e-138At1g50830841505unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFABC.G.S.X.
0.011e+036At5g43120834329tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MPFOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.014e-138Glycine maxGmaAffx.48843.1.S1_atCD395266--3e-5At5g66055AKRP (ANKYRIN REPEAT PROTEIN)C.G.S.X.
0.016e-136Hordeum vulgareEBro02_SQ008_C06_atEBro02_SQ008_C06--5e+0At4g26570ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3)C.G.S.X.
0.016e-138Oryza sativaOs.4788.1.S1_at---0C.G.S.X.
0.054e-138Populus trichocarpaPtpAffx.220069.1.S1_atpmrna36356hypothetical protein-3e-1At1g52620pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.013e-138Triticum aestivumTa.26072.1.A1_atCD452466--6e+0At5g26667PYR6C.G.S.X.
0.014e-136Vitis vinifera1621997_s_atCF512249hypothetical protein LOC100259237-2e-1At1g14200zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.022e+034Zea maysZm.4812.1.A1_atBG873771--6e+0At5g26220ChaC-like family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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