Gene omics information

Query gene ID At1g52580
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g52580841690ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFAS.X.H.G.
0.9195.6At2g24370816973ATP binding / kinase/ protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVAS.X.H.G.
0.7586.9At4g04930825832DES-1-LIKEEncodes a sphingolipid delta4-desaturase, involved in sphingolipid biosynthesis. Specifically expressed in floral tissues. Knockout mutants were devoid of sphinga-4,8-dienine in floral tissues.S.X.H.G.
0.6781.6At2g17890816299CPK16member of Calcium Dependent Protein KinaseS.X.H.G.
0.4457.2At3g19310821465phospholipase C/ phosphoric diester hydrolaseF:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:endomembrane system;FPOBMS.X.H.G.
0.3338.1At3g06260819800GATL4 (Galacturonosyltransferase-like 4)Encodes a protein with putative galacturonosyltransferase activity.S.X.H.G.
0.3235.7At5g12000831073kinaseF:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
224.9100.0GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
214.5100.0GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
207.8100.0GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
164.4100.0GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
152.299.9GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
145.699.9GSM239252Columbia glabrous (C24) wild type stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
145.199.9GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
142.999.9GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.033e-240At4g0081082800460S acidic ribosomal protein P1 (RPP1B)F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus;MFPOAC.G.S.X.
0.073e-240At3g53780824545rhomboid family proteinF:unknown;P:unknown;C:plasma membrane;BOMPAFC.G.S.X.
0.025e-136At1g43580840942unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.032e+034At5g07250830616ATRBL3 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3)F:molecular_function unknown;P:unknown;C:integral to membrane;BOMPFAC.G.S.X.
0.022e+034At5g17400831606ER-ANT1 (ENDOPLASMIC RETICULUM-DENINE NUCLEOTIDE TRANSPORTER 1)This gene is predicted to encode an ER-localized adenine nucleotide transporter with six putative transmembrane helices. It appears to act as a ATP:ADP antiporter when expressed in E.coli plasma membranes. Transcript levels for several ER-localized chaperones (e.g. BIP1/2) and other ATP-requiring ER proteins (e.g. CPK2) are reduced in er-ant1 knock-out lines, suggesting a lack of adequate ATP transport into the ER in these mutants. They also have reduced seed oil and seed protein levels.C.G.S.X.
0.032e+034At4g095455008131-Encodes a ECA1 gametogenesis related family proteinC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.044e-240Glycine maxGmaAffx.49229.2.S1_atBE609485--4e-9At2g29050ATRBL1 (Arabidopsis thaliana Rhomboid-like 1)C.G.S.X.
0.049e-134Hordeum vulgareHS08M08u_s_atHS08M08u--1e+0At1g52580ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)C.G.S.X.
0.032e-448Oryza sativaOs04g0569300AK058648.1--2e-4At1g52580ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)C.G.S.X.
0.063e-344Populus trichocarpaPtpAffx.32440.1.S1_atDN489928hypothetical protein-6e-16At1g63120ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)C.G.S.X.
0.058e-342Triticum aestivumTa.9282.1.S1_atBQ162481--1e-2At1g52580ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)C.G.S.X.
0.054e-238Vitis vinifera1613008_atCF415576hypothetical protein LOC100261912-5e-3At4g0081060S acidic ribosomal protein P1 (RPP1B)C.G.S.X.
0.041e-240Zea maysZm.19080.1.A1_atCO522397membrane protein-1e-3At2g29050ATRBL1 (Arabidopsis thaliana Rhomboid-like 1)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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