CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g52510

Gene name hydrolase, alpha/beta fold family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g52510 841682 hydrolase, alpha/beta fold family protein F:hydrolase activity, catalytic activity;P:unknown;C:chloroplast, chloroplast envelope;BOPMFA S.X. H.G.
0.78 88.6 At3g54050 824572 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative F:fructose 1,6-bisphosphate 1-phosphatase activity, phosphoric ester hydrolase activity;P:response to cold, fructose metabolic process;C:apoplast, stromule, chloroplast stroma, chloroplast;BOMPFA S.X. H.G.
0.75 86.9 At5g19220 832042 APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1) Encodes the large subunit of ADP-glucose pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL1 is the major large subunit isoform present in leaves. Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions. S.X. H.G.
0.73 85.5 At1g15980 838168 NDF1 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1) encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP. S.X. H.G.
0.73 85.5 At1g51110 841534 plastid-lipid associated protein PAP / fibrillin family protein F:structural molecule activity;P:tryptophan biosynthetic process;C:chloroplast thylakoid membrane, chloroplast, membrane;PBO S.X. H.G.
0.71 84.2 At3g63140 825489 CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA) Encodes a protein with ribonuclease activity that is involved in plastid rRNA maturation. S.X. H.G.
0.71 84.2 At1g65230 842830 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PB S.X. H.G.
0.71 84.2 At5g43750 834396 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:chloroplast thylakoid membrane, chloroplast;P S.X. H.G.
0.66 80.1 At1g18060 838386 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;PBO S.X. H.G.
0.66 80.1 At3g48420 824000 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast, chloroplast stroma, chloroplast envelope;BOPMFAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.9 99.3 GSM184151 ATR1_OE_rep2 GSE7570 ATR1_like_Clade_OE_and_miR
9.4 99.1 GSM183515 ATR1_OE_rep1 GSE7570 ATR1_like_Clade_OE_and_miR
9.1 99.1 GSM77175 04h low CO2 + light replicate A GSE3423 Carbon fixation (endogenous sugar) and light-dependent gene expression
9.1 99.1 GSM269488 mkk2, no-treatment, rep-A GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
9.0 99.1 GSM183511 MYB76_OE_rep1 GSE7570 ATR1_like_Clade_OE_and_miR
8.9 99.0 GSM131468 AtGen_6-9612_Heatstress(3h)+21hrecovery-Shoots-24.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
8.9 99.0 GSM183516 MYB51_OE_rep1 GSE7570 ATR1_like_Clade_OE_and_miR
8.6 99.0 GSM318332 ML_35DAS_1 GSE12676 Arabidopsis thaliana Ler developmental series
8.5 99.0 GSM318330 EL_14DAS_1 GSE12676 Arabidopsis thaliana Ler developmental series
8.3 99.0 E-MEXP-809-raw-cel-1123684107
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 6e-1 36 At5g62410 836362 SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) SMC2-1 (SMC2) C.G. S.X.
0.01 6e-1 36 At2g13840 815867 PHP domain-containing protein F:DNA binding, DNA-directed DNA polymerase activity, catalytic activity;P:DNA replication;C:cellular_component unknown;BOAPF C.G. S.X.
0.01 6e-1 36 At1g66930 843011 serine/threonine protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.01 6e-1 36 At1g73590 843693 PIN1 (PIN-FORMED 1) Encodes an auxin efflux carrier involved in shoot and root development. It is involved in the maintenance of embryonic auxin gradients. Loss of function severely affects organ initiation, pin1 mutants are characterised by an inflorescence meristem that does not initiate any flowers, resulting in the formation of a naked inflorescence stem. PIN1 is involved in the determination of leaf shape by actively promoting development of leaf margin serrations. In roots, the protein mainly resides at the basal end of the vascular cells, but weak signals can be detected in the epidermis and the cortex. Expression levels and polarity of this auxin efflux carrier change during primordium development suggesting that cycles of auxin build-up and depletion accompany, and may direct, different stages of primordium development. PIN1 action on plant development does not strictly require function of PGP1 and PGP19 proteins. C.G. S.X.
0.01 2e+0 34 At5g35370 833498 ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding F:in 7 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 2e+0 34 At5g38490 833837 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P C.G. S.X.
0.01 2e+0 34 At5g62600 836381 transportin-SR-related F:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MFPOB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 1e-48 194 Glycine max Gma.4553.1.A1_at BU081133 - - 1e-48 At1g52510 hydrolase, alpha/beta fold family protein C.G. S.X.
0.11 8e-14 77 Hordeum vulgare Contig10144_s_at Contig10144 - - 1e-13 At1g52510 hydrolase, alpha/beta fold family protein C.G. S.X.
0.21 6e-21 103 Oryza sativa Os04g0644600 AK099966.1 - Epoxide hydrolase family protein 4e-21 At1g52510 hydrolase, alpha/beta fold family protein C.G. S.X.
0.23 4e-18 93 Populus trichocarpa PtpAffx.112731.1.A1_at CV239317 - - 2e-18 At1g52510 hydrolase, alpha/beta fold family protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.4478.1.S1_at CA739796 - - 5e-1 At3g26690 ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13) C.G. S.X.
0.11 3e-9 61 Vitis vinifera 1616407_at CD715829 hypothetical protein LOC100250971 - 7e-9 At1g52510 hydrolase, alpha/beta fold family protein C.G. S.X.
0.02 4e+0 32 Zea mays ZmAffx.354.1.A1_at AI670541 - - 8e-1 At4g28485 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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