Gene omics information

Query gene ID At1g52410
Gene name TSA1 (TSK-ASSOCIATING PROTEIN 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6781.6At1g52410841671TSA1 (TSK-ASSOCIATING PROTEIN 1)Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers.S.X.H.G.
0.6176.7At1g52000841629jacalin lectin family proteinF:molecular_function unknown;P:response to salt stress;C:cellular_component unknown;BOMPFVAS.X.H.G.
0.5065.3At1g52400841670BGLU18 (BETA GLUCOSIDASE 18)encodes a member of glycosyl hydrolase family 1, located in inducible ER bodies which were formed after wounding, required in inducible ER body formationS.X.H.G.
0.4050.8At3g28220822448meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:response to salt stress;C:vacuole, chloroplast envelope;PMOS.X.H.G.
0.2522.6At2g43530818954trypsin inhibitor, putativeEncodes a defensin-like (DEFL) family protein.S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
78.599.9E-TABM-209-raw-cel-1316546519
62.899.8E-TABM-209-raw-cel-1316546455
52.699.8GSM134394St.Clair_1-91_267b_Tsu-1_0.02%-silwet_Rep1_ATH1GSE5755Expression Level Polymorphism Project (ELP) - Tsu-1
49.599.8GSM134391St.Clair_1-52_279b_Est_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1GSE5754Expression Level Polymorphism Project (ELP) - Est
49.499.8GSM134430St.Clair_1-55_269b_Kin-0_0.02%-silwet_Rep1_ATH1GSE5757Expression Level Polymorphism Project (ELP) - Kin-0
48.499.8GSM134413St.Clair_1-110_375_Van-0_0.02%-silwet_Rep2_ATH1GSE5756Expression Level Polymorphism Project (ELP) - Van-0
45.499.8E-MEXP-1474-raw-cel-1593932673
44.799.8GSM128654Underwood_1-7_DC3000-10e6-24h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
43.999.8E-TABM-209-raw-cel-1316546503
42.299.8GSM10442WT Ovule 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.304e-31137At3g15950820839NAI2Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies.C.G.S.X.
0.062e-552At3g15960820840ATP binding / mismatched DNA bindingF:mismatched DNA binding, ATP binding;P:mismatch repair;C:endomembrane system;MOBFPAVC.G.S.X.
0.017e-240At5g25610832636RD22responsive to dehydration 22 (RD22) mediated by ABAC.G.S.X.
0.017e-240At4g21020827849late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBPFVAC.G.S.X.
0.017e-240At4g18240827550ATSS4F:transferase activity, transferring glycosyl groups;P:starch metabolic process;C:chloroplast;MOBPFAVC.G.S.X.
0.017e-240At4g22600828356unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.017e-240At2g01400814668unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.012e+036Glycine maxHgAffx.15110.1.S1_atCB378826--4e+0At5g42750BKI1 (BRI1 kinase inhibitor 1)C.G.S.X.
0.012e+034Hordeum vulgareContig1519_s_atContig1519--3e-2At4g19100unknown proteinC.G.S.X.
0.012e+036Oryza sativaOs05g01635009633.m00633--2e-5At4g23270protein kinase family proteinC.G.S.X.
0.024e-138Populus trichocarpaPtpAffx.211158.1.S1_s_atpmrna21935hypothetical protein-3e+0At5g22140pyridine nucleotide-disulphide oxidoreductase family proteinC.G.S.X.
0.018e-240Triticum aestivumTa.16251.3.S1_x_atCA733104--8e-1At5g48335unknown proteinC.G.S.X.
0.011e+034Vitis vinifera1612362_atCF372908hypothetical protein LOC100243667-4e-31At4g00180YAB3 (YABBY3)C.G.S.X.
0.011e-138Zea maysZm.12634.3.A1_a_atAI891366--4e+0At4g16830nuclear RNA-binding protein (RGGA)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0050832Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage