CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g52100

Gene name jacalin lectin family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At1g52100 841640 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PFO S.X. H.G.
0.31 33.8 At4g23680 828468 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.11 4.1 At2g38530 818435 LTP2 (LIPID TRANSFER PROTEIN 2) Involved in lipid transfer between membranes. Belongs to a family of Lipid transfer proteins. Sequence similarity to other plant/Arabidopsis LPT genes but highest similarity to LPT1. Stress and pathogen-inducible motifs found in the upstream region. Expressed in flower, leaves and siliques but absent in roots. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. S.X. H.G.
0.05 1.1 At2g39310 818516 JAL22 (JACALIN-RELATED LECTIN 22) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.04 0.9 At5g04530 830332 KCS19 (3-KETOACYL-COA SYNTHASE 19) Encodes KCS19, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
121.0 99.9 Cornah_1-15_msc_Rep3_ATH1
59.4 99.8 Cornah_1-10_A2-irv_Rep3_ATH1
59.3 99.8 GSM133723 McCormac_1-1_wildtype-NFtreated_Rep1_ATH1 GSE5726 Seedling transcriptome affected by Norflurazon-induced photobleaching of chloroplasts
58.2 99.8 Cornah_1-14_msc_Rep2_ATH1
52.8 99.8 GSM142689 MH001_ATH1_A3-grevi-CC3 GSE6158 Investigating the links between organic acid and carbohydrate regulation of gene expression.
50.5 99.8 GSM134774 Col-0_5day_-lincomycin_rep2 GSE5770 col0,gun1,abi4-102, w/wo lincomycin
49.9 99.8 GSM142691 MH001_ATH1_A5-grevi-AC2 GSE6158 Investigating the links between organic acid and carbohydrate regulation of gene expression.
47.3 99.8 GSM128746 Edwards_3-2_fri-flc1_Rep1_ATH1 GSE5528 Identifying targets of FLC at 27oC
46.8 99.8 GSM142694 MH001_ATH1_A8-grevi-CT2 GSE6158 Investigating the links between organic acid and carbohydrate regulation of gene expression.
45.3 99.8 E-MEXP-1304-raw-cel-1530618339
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.58 2e-93 343 At5g35940 833584 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBM C.G. S.X.
0.64 2e-53 210 At5g35950 833586 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO C.G. S.X.
0.25 5e-29 129 At2g25980 817139 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO C.G. S.X.
0.16 2e-16 87 At5g38550 833843 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB C.G. S.X.
0.08 3e-15 83 At5g28520 832945 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.13 2e-13 77 At1g60110 842306 - F:unknown;P:unknown;C:unknown;PO C.G. S.X.
0.16 2e-13 77 At1g60130 842308 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.11 2e-13 77 At1g60095 842305 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.16 1e-11 71 At1g52130 841643 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e-1 36 Glycine max PsAffx.CL1394Contig1_s_at PsAffx.CL1394Contig1 - - 9e-1 At1g05420 OFP12 (OVATE FAMILY PROTEIN 12) C.G. S.X.
0.02 1e+0 34 Hordeum vulgare EBro01_SQ001_M06_at EBro01_SQ001_M06 - - 8e-1 At5g20885 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 7e-2 40 Oryza sativa Os09g0344700 9637.m01501 - Conserved hypothetical protein 4e+0 At4g24660 ATHB22 (HOMEOBOX PROTEIN 22) C.G. S.X.
0.03 2e-1 38 Populus trichocarpa PtpAffx.218377.1.S1_s_at pmrna33971 hypothetical protein - 9e+0 At5g07475 plastocyanin-like domain-containing protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.54566.1.S1_s_at CA679969 - - 8e-1 At2g27030 CAM5 (CALMODULIN 5) C.G. S.X.
0.03 7e-1 34 Vitis vinifera 1611444_at CF211599 - - 2e-1 At2g40310 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.02 2e-1 36 Zea mays Zm.6625.1.A1_at AY104547.1 60S ribosomal protein L9 - 1e-16 At1g33140 PGY2 (PIGGYBACK2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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