CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g52060

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.29 30.3 At1g52060 841635 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB S.X. H.G.
0.43 55.3 At3g20160 821560 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:farnesyltranstransferase activity;P:isoprenoid biosynthetic process;C:unknown;OBFPMAV S.X. H.G.
0.40 50.8 At3g16440 820892 ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B) myrosinase-binding protein-like protein (AtMLP-300B) mRNA, S.X. H.G.
0.35 41.6 At3g49190 824080 condensation domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF S.X. H.G.
0.33 38.1 At1g06090 837118 fatty acid desaturase family protein F:oxidoreductase activity;P:lipid metabolic process;C:cellular_component unknown;BOMFPV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
448.3 100.0 GSM184480 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
292.5 100.0 GSM184483 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
201.1 100.0 GSM265414 Arabidopsis, root cells, -Fe, replicate 1 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
173.0 100.0 GSM184484 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
162.0 99.9 GSM133969 Birnbaum_1-20_LRC-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
147.4 99.9 GSM133968 Birnbaum_1-19_LRC-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
142.3 99.9 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
129.4 99.9 GSM184478 Lateral Root Cap root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
116.8 99.9 GSM184481 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
96.4 99.9 GSM184482 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.85 1e-155 549 At1g52070 841636 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB C.G. S.X.
0.65 1e-26 121 At1g52050 841634 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO C.G. S.X.
0.21 2e-25 117 At2g25980 817139 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO C.G. S.X.
0.11 2e-9 63 At1g57570 842133 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.09 8e-9 61 At5g35950 833586 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO C.G. S.X.
0.07 1e-7 57 At5g28520 832945 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.16 5e-7 56 At5g38550 833843 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB C.G. S.X.
0.08 8e-6 52 At1g60095 842305 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.07 3e-5 50 At1g52100 841640 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Glycine max GmaAffx.20866.1.S1_at AW185041 - - 3e+0 At5g04045 Expressed protein C.G. S.X.
0.02 4e+0 32 Hordeum vulgare Contig21499_at Contig21499 - - 4e+0 At3g17930 unknown protein C.G. S.X.
0.02 4e+0 34 Oryza sativa Os02g0173300 AK107829.1 - - 2e+0 At4g11430 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.03 6e-1 36 Populus trichocarpa PtpAffx.98695.1.S1_s_at BU830106 hypothetical protein - 1e+0 At4g04745 unknown protein C.G. S.X.
0.03 8e+0 32 Triticum aestivum TaAffx.86852.1.S1_at CA599753 - - 4e-3 At3g09720 DEAD/DEAH box helicase, putative C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1613354_at CF371915 - - 6e-1 At4g14746 - C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.247.1.A1_at AI670259 - - 8e-1 At1g21830 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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