CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g51420

Gene name SPP1 (SUCROSE-PHOSPHATASE 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.22 17.5 At1g51420 841567 SPP1 (SUCROSE-PHOSPHATASE 1) F:phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity;P:sucrose biosynthetic process, metabolic process;C:plasma membrane;BPO S.X. H.G.
0.50 65.3 At5g54040 835487 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOF S.X. H.G.
0.40 50.8 At2g04680 815011 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOF S.X. H.G.
0.40 50.8 At5g54020 835485 zinc ion binding F:zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOF S.X. H.G.
0.25 22.6 At5g48175 834870 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
144.1 99.9 GSM184504 Pericycle root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
84.5 99.9 GSM184520 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
82.7 99.9 GSM184507 Pericycle root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
78.3 99.9 GSM184516 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
76.8 99.9 GSM133957 Fukuda_1-2_0B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
65.4 99.8 GSM184510 Pericycle root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
64.9 99.8 GSM184505 Pericycle root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
61.0 99.8 GSM184481 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
60.2 99.8 GSM184517 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
57.6 99.8 GSM184930 Arabidopsis, whole roots, 140 mM NaCl, 1 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.84 0 884 At2g35840 818157 sucrose-phosphatase 1 (SPP1) F:phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity;P:response to cadmium ion, sucrose biosynthetic process;C:nucleus, cytoplasm;BPO C.G. S.X.
0.59 4e-42 173 At3g52340 824399 SPP2 (SUCROSE-6F-PHOSPHATE PHOSPHOHYDROLASE 2) sucrose-phosphatase (SPP2) C.G. S.X.
0.13 2e-4 48 At3g54270 824594 sucrose-phosphatase 3 (SPP3) F:phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity;P:sucrose biosynthetic process, metabolic process;C:unknown;BPOA C.G. S.X.
0.02 2e-1 38 At5g50060 835070 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.02 2e-1 38 At3g24730 822071 catalytic F:catalytic activity;P:mitosis;C:spliceosome;MFPO C.G. S.X.
0.01 2e-1 38 At1g65790 842890 ARK1 (A. THALIANA RECEPTOR KINASE 1) An alternatively spliced gene that encodes a functional transmembrane receptor serine/threonine kinase, alternate form may not have transmembrane domain. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 7e-14 79 Glycine max Gma.4160.2.S1_at BQ474014 - - 2e-32 At2g35840 sucrose-phosphatase 1 (SPP1) C.G. S.X.
0.13 2e-8 59 Hordeum vulgare Contig2724_s_at Contig2724 - - 1e-18 At2g35840 sucrose-phosphatase 1 (SPP1) C.G. S.X.
0.12 4e-13 77 Oryza sativa Os01g0376700 AK071525.1 - Sucrose-phosphatase (EC 3.1.3.24) 2e-7 At2g35840 sucrose-phosphatase 1 (SPP1) C.G. S.X.
0.28 9e-35 149 Populus trichocarpa PtpAffx.206440.1.S1_at pmrna12783 hypothetical protein - 8e-53 At2g35840 sucrose-phosphatase 1 (SPP1) C.G. S.X.
0.15 8e-13 75 Triticum aestivum Ta.274.2.S1_at AY029159.1 sucrose-6F-phosphate phosphohydrolase SPP3 - 1e-24 At2g35840 sucrose-phosphatase 1 (SPP1) C.G. S.X.
0.24 1e-14 79 Vitis vinifera 1608257_at CB975800 hypothetical protein LOC100258115 - 1e-34 At2g35840 sucrose-phosphatase 1 (SPP1) C.G. S.X.
0.14 1e-3 44 Zea mays Zm.2613.1.A1_at AF283564.2 sucrose-phosphatase1 - 4e-15 At2g35840 sucrose-phosphatase 1 (SPP1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0005986 The chemical reactions and pathways resulting in the formation of sucrose, the disaccharide fructofuranosyl-glucopyranoside.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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