CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g51260

Gene name LPAT3

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.47 61.2 At1g51260 841549 LPAT3 ACYL-COA:1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE, PUTATIVE SIMILAR TO ACYL-COA:1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE GI:4583544 FROM [BRASSICA NAPUS] S.X. H.G.
0.74 86.1 At1g43630 840947 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB S.X. H.G.
0.67 81.6 At3g22650 821836 CEG (CEGENDUO) F:molecular_function unknown;P:response to auxin stimulus, lateral root formation;C:cellular_component unknown;PO S.X. H.G.
0.58 73.8 At3g02440 821154 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOFB S.X. H.G.
0.58 73.8 At2g10970 815562 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.57 73.8 At1g16360 838205 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein F:unknown;P:biological_process unknown;C:membrane;MOFP S.X. H.G.
0.56 73.0 At2g45610 819169 hydrolase F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BPOFMAV S.X. H.G.
0.48 62.5 At5g64690 836590 neurofilament triplet H protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV S.X. H.G.
0.47 61.2 At3g55190 824685 esterase/lipase/thioesterase family protein F:catalytic activity;P:glycerol biosynthetic process;C:cellular_component unknown;BOPMFVA S.X. H.G.
0.43 55.3 At3g12160 820393 RABA4D (RAB GTPASE HOMOLOG A4D) Encodes RABA4D, a member of the Arabidopsis RabA4 subfamily of Rab GTPase proteins. It is transported in exocytic vesicles to the apical tip of pollen tubes where it appears to promote tip growth. Proper localization of RabA4d depends on ROP1, RIC3, and RIC4 activity. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
356.7 100.0 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
307.1 100.0 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
196.5 100.0 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
163.8 99.9 GSM184483 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
129.7 99.9 GSM239252 Columbia glabrous (C24) wild type stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
125.5 99.9 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
107.3 99.9 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
93.5 99.9 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
85.2 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
82.0 99.9 GSM184480 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.07 4e-5 50 At3g57650 824934 LPAT2 Encodes an endoplasmic reticulum localized protein with lysophosphatidyl acyltransferase activity. C.G. S.X.
0.02 9e-3 42 At3g55920 824758 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:plasma membrane;BOMFPAV C.G. S.X.
0.02 4e-2 40 At5g40550 834053 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO C.G. S.X.
0.01 1e-1 38 At4g27290 828837 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding F:sugar binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 1e-1 38 At2g01980 814729 SOS1 (SALT OVERLY SENSITIVE 1) Encodes a plasma membrane-localized Na+/H+ antiporter SOS1. Functions in the extrusion of toxic Na+ from cells and is essential for plant salt tolerance. Has 12 predicted transmembrane domains in the N-terminal region and a long cytoplasmic tail of approx. 700 aa at the C-terminal side. SOS1 interacts through its predicted cytoplasmic tail with RCD1, a regulator of oxidative-stress responses, suggesting that SOS1 might function in oxidative-stress tolerance. C.G. S.X.
0.01 6e-1 36 At5g59670 836088 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 6e-1 36 At5g16700 831531 glycosyl hydrolase family 5 protein / cellulase family protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BPFOA C.G. S.X.
0.02 6e-1 36 At4g21260 827875 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;OBPA C.G. S.X.
0.03 6e-1 36 At2g34440 818007 AGL29 (AGAMOUS-LIKE 29) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 9e-10 65 Glycine max GmaAffx.68425.1.S1_at BI425905 - - 1e-35 At3g57650 LPAT2 C.G. S.X.
0.06 2e-11 69 Hordeum vulgare Contig3846_at Contig3846 - - 6e-23 At3g57650 LPAT2 C.G. S.X.
0.04 2e-5 52 Oryza sativa Os11g0637800 CB682849 - 1-acylcerol-3-phosphate acyltransferase-likeprotein 1e-15 At3g57650 LPAT2 C.G. S.X.
0.27 5e-2 40 Populus trichocarpa PtpAffx.151124.1.S1_s_at BU888639 hypothetical protein - 1e-13 At3g57650 LPAT2 C.G. S.X.
0.09 1e-8 61 Triticum aestivum Ta.27665.1.S1_at AL829455 1-acy1-glycerol-3-phosphate acyltransferase - 4e-23 At3g57650 LPAT2 C.G. S.X.
0.10 1e-11 69 Vitis vinifera 1618883_at CB970126 hypothetical protein LOC100262467 - 1e-47 At3g57650 LPAT2 C.G. S.X.
0.07 1e-9 63 Zea mays Zm.6560.1.S1_at Z29518.1 phospholipid synthesis1 - 8e-35 At3g57650 LPAT2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00355 Acyltransferase
00423 Glycerolipid biosynthesis (eukaryotic pathway)
00428 Triacylglycerol biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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