CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g51190

Gene name PLT2 (PLETHORA 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.13 5.8 At1g51190 841542 PLT2 (PLETHORA 2) Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors. S.X. H.G.
0.40 50.8 At5g57500 835854 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:endomembrane system, membrane;PMOF S.X. H.G.
0.33 38.1 At4g23590 828459 aminotransferase class I and II family protein F:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAF S.X. H.G.
0.27 26.2 At4g01240 827909 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.26 24.4 At1g23160 838924 auxin-responsive GH3 family protein F:unknown;P:response to auxin stimulus;C:unknown;OPBMF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1657.3 100.0 GSM133957 Fukuda_1-2_0B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
108.5 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
105.9 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
94.7 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
93.5 99.9 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
89.5 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
87.9 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
85.5 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
83.7 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
83.4 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.56 1e-160 567 At3g20840 821632 PLT1 (PLETHORA 1) Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors. C.G. S.X.
0.21 2e-47 190 At5g17430 831609 BBM (BABY BOOM) Encodes an AP2-domain containing protein similar to ANT. Expressed in embryos and lateral root primordium. C.G. S.X.
0.23 6e-42 173 At5g57390 835845 AIL5 (AINTEGUMENTA-LIKE 5) Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations. C.G. S.X.
0.16 5e-24 113 At1g72570 843589 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBV C.G. S.X.
0.21 2e-23 111 At5g65510 836677 AIL7 (AINTEGUMENTA-like 7) F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POB C.G. S.X.
0.14 1e-21 105 At5g10510 830915 AIL6 (AINTEGUMENTA-LIKE 6) Encodes an AP2-domain transcription factor involved in root stem cell identity and root development. C.G. S.X.
0.14 2e-17 91 At4g37750 829931 ANT (AINTEGUMENTA) ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 3e-112 406 Glycine max GmaAffx.83598.1.S1_at BU964918 PLETHORA 2 - 2e-112 At1g51190 PLT2 (PLETHORA 2) C.G. S.X.
0.02 1e-1 38 Hordeum vulgare Contig15309_at Contig15309 - - 1e-2 At4g37750 ANT (AINTEGUMENTA) C.G. S.X.
0.16 1e-29 133 Oryza sativa Os01g0899800 9629.m06698 - ANT (Ovule development protein aintegumenta) 6e-30 At1g51190 PLT2 (PLETHORA 2) C.G. S.X.
0.36 2e-94 347 Populus trichocarpa PtpAffx.203519.1.S1_at pmrna6993 AP2 domain-containing transcription factor - 2e-94 At1g51190 PLT2 (PLETHORA 2) C.G. S.X.
0.08 2e-8 61 Triticum aestivum TaAffx.64176.1.S1_at BJ312281 - - 8e-11 At1g72570 DNA binding / transcription factor C.G. S.X.
0.13 5e-18 91 Vitis vinifera 1610205_at CF510900 hypothetical protein LOC100252316 - 4e-34 At4g37750 ANT (AINTEGUMENTA) C.G. S.X.
0.08 4e-4 46 Zea mays Zm.123.1.S1_at AY109146.1 heat shock complementing factor1 - 2e-5 At5g57390 AIL5 (AINTEGUMENTA-LIKE 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0048364 The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo.
X GO:0007389 Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate.
X GO:0019827 The process by which an organism retains a population of stem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate.
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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