Gene omics information

Query gene ID At1g50970
Gene name membrane trafficking VPS53 family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g50970841519membrane trafficking VPS53 family proteinF:transporter activity;P:transport;C:endomembrane system;MFOPBAS.X.H.G.
0.5267.4At1g62130842509AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:chloroplast;OBMFPAVS.X.H.G.
0.4963.5At5g22710832334-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.4761.2At3g06290819803-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBS.X.H.G.
0.4659.8At1g03960839361calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MOPS.X.H.G.
0.4659.8At4g20060827751EMB1895 (EMBRYO DEFECTIVE 1895)F:binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MPOS.X.H.G.
0.4659.8At3g60310825202unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.4558.3At4g23330828432eukaryotic translation initiation factor-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMS.X.H.G.
0.4558.3At3g52260824391pseudouridine synthase family proteinF:pseudouridine synthase activity, RNA binding;P:pseudouridine synthesis;C:cellular_component unknown;BOMFPAS.X.H.G.
0.4457.2At2g27790817326nucleic acid binding / nucleotide bindingF:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
228.2100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
80.399.9GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
71.299.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
65.399.8GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
61.199.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.099.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.799.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
58.099.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
55.899.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
54.399.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.533e-164579At1g50500841472HIT1 (HEAT-INTOLERANT 1)encodes a member of VPS53 family protein involved in the retrograde trafficking of vesicles to the late Golgi. Mutants in this gene are more sensitive to heat and osmotic stress.C.G.S.X.
0.012e-138At1g04920839382ATSPS3F (sucrose phosphate synthase 3F)Encodes a protein with putative sucrose-phosphate synthase activity.C.G.S.X.
0.018e-136At5g04680830346-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFC.G.S.X.
0.018e-136At5g04700830348-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBFC.G.S.X.
0.018e-136At5g49100834969unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFPVC.G.S.X.
0.018e-136At4g03550825650ATGSL05 (GLUCAN SYNTHASE-LIKE 5)Encodes a callose synthase that is required for wound and papillary callose formation in response to fungal pathogens Erysiphe and Blumeria. Mutants are resistant to P. parasitica and exhibit an exaggerated PR1 response.Contributes to PAMP-induced basal defense.C.G.S.X.
0.018e-136At2g20440816563RabGAP/TBC domain-containing proteinF:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MFOPC.G.S.X.
0.028e-136At2g01400814668unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PC.G.S.X.
0.018e-136At1g31650840052ROPGEF14Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.061e-346Glycine maxGma.14089.1.S1_atBE554790--5e-37At1g50500HIT1 (HEAT-INTOLERANT 1)C.G.S.X.
0.022e+034Hordeum vulgareHVSMEn0022B10r2_s_atHVSMEn0022B10r2--1e+0At1g71970unknown proteinC.G.S.X.
0.053e-1171Oryza sativaOs01g0906200AK106369.1-Hypothetical protein8e-7At1g50500HIT1 (HEAT-INTOLERANT 1)C.G.S.X.
0.174e-28127Populus trichocarpaPtpAffx.140354.1.A1_atCV260891hypothetical protein-1e-68At1g50500HIT1 (HEAT-INTOLERANT 1)C.G.S.X.
0.024e+034Triticum aestivumTaAffx.29380.1.S1_atCA644023--4e+0Atcg00440-C.G.S.X.
0.024e+032Vitis vinifera1619496_atCF372656hypothetical LOC100265165-1e-1At4g17950DNA-binding family proteinC.G.S.X.
0.012e+034Zea maysZm.1224.1.A1_atCF634479hypothetical protein LOC100194405-7e-34At5g41340UBC4 (UBIQUITIN CONJUGATING ENZYME 4)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006810The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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