CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g50930

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g50930 841515 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFVB S.X. H.G.
0.95 97.0 At2g05870 815139 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.95 97.0 At2g01780 814709 S-locus glycoprotein, putative F:sugar binding;P:recognition of pollen;C:cellular_component unknown;P S.X. H.G.
0.94 96.7 At2g25990 817140 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.94 96.7 At2g22960 816827 serine carboxypeptidase S10 family protein F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMOF S.X. H.G.
0.94 96.7 At2g05500 815099 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.94 96.7 At5g35270 833481 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.93 96.4 At1g59535 842244 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.93 96.4 At2g20070 816526 - F:molecular_function unknown;P:unknown;C:endomembrane system;P S.X. H.G.
0.92 96.0 At1g23910 839002 - F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
217.5 100.0 E-MEXP-509-raw-cel-829148348
205.1 100.0 E-MEXP-509-raw-cel-829148561
201.7 100.0 E-MEXP-509-raw-cel-829148525
197.5 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
197.3 100.0 E-MEXP-509-raw-cel-829148456
149.1 99.9 E-MEXP-509-raw-cel-829148492
145.5 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
143.0 99.9 E-MEXP-509-raw-cel-829148597
133.0 99.9 E-MEXP-509-raw-cel-829148420
131.6 99.9 E-MEXP-509-raw-cel-829148129
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.26 9e-14 77 At3g20557 3768762 unknown protein F:unknown;P:unknown;C:unknown;P C.G. S.X.
0.02 3e-1 36 At4g00940 827952 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POM C.G. S.X.
0.01 3e-1 36 At4g21070 827854 ATBRCA1 Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control. C.G. S.X.
0.02 3e-1 36 At3g02340 821090 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVAB C.G. S.X.
0.02 3e-1 36 At2g43990 819004 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMBFPV C.G. S.X.
0.04 3e-1 36 At2g42190 818819 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA C.G. S.X.
0.01 3e-1 36 At1g80930 844433 MIF4G domain-containing protein / MA3 domain-containing protein F:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:cytosol, nucleus;MOFBPVA C.G. S.X.
0.01 3e-1 36 At1g13170 837875 ORP1D (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D) F:oxysterol binding;P:steroid metabolic process;C:unknown;MFOP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-1 36 Glycine max GmaAffx.14122.1.S1_at BI971741 - - 5e-2 At4g40045 unknown protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare HV10M02u_at HV10M02u - - 4e+0 At5g23230 NIC2 (NICOTINAMIDASE 2) C.G. S.X.
0.04 6e-1 36 Oryza sativa Os.46004.1.S1_at - - - 0 C.G. S.X.
0.04 1e-1 38 Populus trichocarpa PtpAffx.211365.1.S1_at pmrna22277 hypothetical protein - 8e-5 At4g01895 systemic acquired resistance (SAR) regulator protein NIMIN-1-related C.G. S.X.
0.04 2e-2 40 Triticum aestivum TaAffx.129513.2.A1_x_at BJ306606 - - 5e-18 At1g07890 APX1 (ascorbate peroxidase 1) C.G. S.X.
0.04 9e-2 36 Vitis vinifera 1620915_at CF511488 - - 2e-1 At2g17740 DC1 domain-containing protein C.G. S.X.
0.03 8e+0 30 Zea mays Zm.7693.1.A1_at BM079513 - - 3e+0 At4g14105 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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