CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g50740

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At1g50740 841496 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;MPBOF S.X. H.G.
0.50 65.3 At5g35735 833550 auxin-responsive family protein F:unknown;P:unknown;C:plasma membrane, membrane;PMFOB S.X. H.G.
0.40 50.8 At5g06320 830520 NHL3 encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and Pseudomonas syringae pv. tomato DC3000. The gene product is localized to the plasma membrane. S.X. H.G.
0.40 50.8 At5g13190 831158 - F:unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.31 33.8 At5g47070 834753 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
56.8 99.8 E-MEXP-807-raw-cel-1173273196
40.9 99.8 GSM133973 Birnbaum_1-3_src5-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
38.9 99.8 E-MEXP-807-raw-cel-1173273170
38.6 99.8 GSM184917 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
33.1 99.7 E-NASC-76-raw-cel-1359879132
27.6 99.7 E-NASC-76-raw-cel-1359878951
27.3 99.7 GSM154507 Arabidopsis growing pollen tubes rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
26.8 99.7 E-NASC-76-raw-cel-1359879106
26.8 99.7 GSM244455 Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
26.2 99.7 GSM133971 Birnbaum_1-1_src5-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.75 2e-41 169 At3g20510 821597 unknown protein F:unknown;P:biological_process unknown;C:nucleus, cytoplasm;MPBFO C.G. S.X.
0.03 7e-1 34 At3g13228 820519 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFV C.G. S.X.
0.01 7e-1 34 At2g22740 816804 SUVH6 Encodes a SU(VAR)3-9 homolog, a methyltransferase involved in histone methylation. The protein was shown to bind to methylated cytosines of CG, CNG and CNN motifs but has a preference for the latter two. This is a member of a subfamily of SET proteins that shares a conserved SRA domain. C.G. S.X.
0.01 7e-1 34 At2g32630 817823 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA C.G. S.X.
0.03 7e-1 34 At1g28310 839725 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOBF C.G. S.X.
0.02 3e+0 32 At5g52940 835371 unknown protein F:unknown;P:unknown;C:mitochondrion;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 3e-7 56 Glycine max GmaAffx.1252.1.S1_at CD416461 - - 4e-7 At1g50740 unknown protein C.G. S.X.
0.07 3e-1 34 Hordeum vulgare HY02C09u_x_at HY02C09u - - 3e-1 At1g50740 unknown protein C.G. S.X.
0.06 9e-2 38 Oryza sativa OsAffx.25504.1.S1_at - - - 0 C.G. S.X.
0.22 6e-2 38 Populus trichocarpa PtpAffx.904.2.S1_at CA823803 hypothetical protein - 8e-5 At3g20510 unknown protein C.G. S.X.
0.05 3e-3 42 Triticum aestivum Ta.22534.2.S1_x_at CA697218 - - 6e-3 At1g50740 unknown protein C.G. S.X.
0.13 3e-3 40 Vitis vinifera 1621870_at CF414005 hypothetical protein LOC100245239 - 9e-8 At3g20510 unknown protein C.G. S.X.
0.04 5e+0 30 Zea mays ZmAffx.850.1.A1_at AI770642 - - 2e-10 At3g57880 C2 domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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