CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g50720

Gene name stigma-specific Stig1 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.56 73.0 At1g50720 841494 stigma-specific Stig1 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFM S.X. H.G.
0.84 91.9 At1g23160 838924 auxin-responsive GH3 family protein F:unknown;P:response to auxin stimulus;C:unknown;OPBMF S.X. H.G.
0.84 91.9 At1g44318 841025 hemb2 F:porphobilinogen synthase activity, catalytic activity, metal ion binding;P:porphyrin biosynthetic process;C:unknown;OBMFAP S.X. H.G.
0.82 90.9 At1g07290 837240 nucleotide-sugar transmembrane transporter F:nucleotide-sugar transmembrane transporter activity;P:biological_process unknown;C:cellular_component unknown;MFPO S.X. H.G.
0.82 90.9 At3g19430 821477 late embryogenesis abundant protein-related / LEA protein-related F:structural constituent of cell wall;P:unknown;C:unknown;MBOFPVA S.X. H.G.
0.80 89.8 At1g50060 841430 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB S.X. H.G.
0.78 88.6 At1g22880 838893 CEL5 (CELLULASE 5) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF S.X. H.G.
0.76 87.4 At5g51470 835221 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POBMF S.X. H.G.
0.76 87.4 At4g26880 828795 stigma-specific Stig1 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFM S.X. H.G.
0.75 86.9 At2g40470 818641 LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15) F:unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
292.8 100.0 GSM226531 L1SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
180.8 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
172.8 100.0 GSM266665 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 4 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
171.9 100.0 GSM266668 Arabidopsis, root cells, columella root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
171.2 100.0 GSM266666 Arabidopsis, root cells, columella root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
158.5 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
148.1 99.9 GSM184832 Arabidopsis, root, longitudinal zone 1, standard conditions, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
145.4 99.9 GSM184483 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
143.3 99.9 GSM266664 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
137.8 99.9 GSM252689 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 0 hrs Taking 70 mm of Stump (8 dpg) rep3 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.19 4e-9 61 At4g26880 828795 stigma-specific Stig1 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFM C.G. S.X.
0.10 6e-2 38 At5g55110 835602 stigma-specific Stig1 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPFO C.G. S.X.
0.01 9e-1 34 At5g58170 835929 SVL5 (SHV3-LIKE 5) F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOMF C.G. S.X.
0.03 9e-1 34 At3g51080 824272 zinc finger (GATA type) family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFMO C.G. S.X.
0.01 4e+0 32 At5g67200 836855 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVA C.G. S.X.
0.03 4e+0 32 At5g28490 832941 LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1) Encodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner. C.G. S.X.
0.02 4e+0 32 At5g28500 832943 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPO C.G. S.X.
0.01 4e+0 32 At5g26570 832706 ATGWD3 chloroplastidic phosphoglucan, water dikinase (PWD) which is required for normal degradation of leaf starch in Arabidopsis. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C3 position. C.G. S.X.
0.02 4e+0 32 At5g60380 836160 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 8e-2 38 Glycine max Gma.17220.1.A1_at AW309460 - - 6e-2 At5g55110 stigma-specific Stig1 family protein C.G. S.X.
0.04 7e+0 30 Hordeum vulgare HVSMEb0011L05r2_x_at HVSMEb0011L05r2 - - 2e+0 At3g05746 unknown protein C.G. S.X.
0.02 2e+0 34 Oryza sativa Os03g0646100 AK100526.1 - Plastid division protein ftsZ1 precursor 3e-35 At2g36250 FTSZ2-1 C.G. S.X.
0.03 5e+0 32 Populus trichocarpa PtpAffx.29149.1.S1_at DN486865 - - 3e-2 At2g47660 unknown protein C.G. S.X.
0.05 4e+0 32 Triticum aestivum TaAffx.85479.1.S1_at CA622412 - - 1e+0 At1g50720 stigma-specific Stig1 family protein C.G. S.X.
0.03 2e+1 28 Vitis vinifera 1622717_s_at CF606082 - - 2e-1 At5g65590 Dof-type zinc finger domain-containing protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.3918.1.S1_at AW062130 membrane protein - 4e+0 At1g50720 stigma-specific Stig1 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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