CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g50660

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g50660 841488 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;MOBFPAV S.X. H.G.
0.20 14.4 At1g67140 843034 SWEETIE (SWEETIE) F:binding;P:trehalose metabolic process, carbohydrate metabolic process, starch metabolic process;C:cytosol;MOBFPVA S.X. H.G.
0.13 5.8 At3g54670 824632 TTN8 (TITAN8) cohesin S.X. H.G.
0.13 5.8 At5g13020 831142 emsy N terminus domain-containing protein / ENT domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO S.X. H.G.
0.11 4.1 At5g08550 830755 ILP1 (increased level of polyploidy1-1D) Encodes a transcriptional repressor that is homologous to the C-terminal region of mammalian GC binding factor. It regulates endoreduplication through control of CYC2A expression. S.X. H.G.
0.07 1.9 At5g07940 830688 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPA S.X. H.G.
0.06 1.4 At3g23900 821973 RNA recognition motif (RRM)-containing protein F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.03 0.6 At5g08390 830737 - F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOPBAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
155.5 99.9 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
95.9 99.9 GSM133957 Fukuda_1-2_0B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
93.7 99.9 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
71.7 99.9 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
70.7 99.9 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
69.7 99.9 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
66.9 99.8 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
61.2 99.8 GSM133963 Fukuda_1-8_6B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
60.0 99.8 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
53.0 99.8 GSM133961 Fukuda_1-6_4B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.55 0 833 At3g20350 821579 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane;MOFBPAV C.G. S.X.
0.01 7e-2 40 At5g60040 836126 NRPC1 Encodes a subunit of RNA polymerase III (aka RNA polymerase C). C.G. S.X.
0.01 3e-1 38 At1g21700 838774 ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3A, the other two members of the SWI3 family. Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Referred to as CHB3 in Zhou et al (2003). C.G. S.X.
0.01 3e-1 38 At1g29300 839804 UNE1 (unfertilized embryo sac 1) F:unknown;P:double fertilization forming a zygote and endosperm;C:unknown;PBOMF C.G. S.X.
0.01 1e+0 36 At5g43810 834403 ZLL (ZWILLE) Encodes a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo. C.G. S.X.
0.01 1e+0 36 At5g64290 836550 DIT2.1 (DICARBOXYLATE TRANSPORT 2.1) F:oxoglutarate:malate antiporter activity;P:malate transport, response to nematode;C:chloroplast, membrane, chloroplast envelope;BOPAMFV C.G. S.X.
0.01 1e+0 36 At5g37630 833741 EMB2656 (EMBRYO DEFECTIVE 2656) F:binding;P:embryonic development ending in seed dormancy, mitotic chromosome condensation;C:cellular_component unknown;MFOPB C.G. S.X.
0.01 1e+0 36 At3g58110 824980 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA C.G. S.X.
0.01 1e+0 36 At3g58120 824981 BZIP61 Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP34. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 9e-36 153 Glycine max GmaAffx.6166.1.S1_at BU927326 - - 1e-27 At3g20350 unknown protein C.G. S.X.
0.03 4e-8 59 Hordeum vulgare Contig11358_at Contig11358 - - 4e-2 At1g11690 unknown protein C.G. S.X.
0.06 6e-13 77 Oryza sativa Os04g0625000 CR289623 - Hypothetical protein 1e-13 At3g20350 unknown protein C.G. S.X.
0.03 7e-12 73 Populus trichocarpa PtpAffx.209576.1.S1_at pmrna18954 hypothetical protein - 9e-16 At3g20350 unknown protein C.G. S.X.
0.03 5e-3 44 Triticum aestivum TaAffx.38206.1.S1_at BJ245068 - - 1e+0 At2g05440 glycine-rich protein C.G. S.X.
0.07 6e-9 61 Vitis vinifera 1613950_at CF414823 hypothetical protein LOC100255542 - 3e-9 At1g50660 unknown protein C.G. S.X.
0.06 2e-9 63 Zea mays Zm.17515.1.S1_at CK370872 - - 4e-9 At1g50660 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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