CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g50430

Gene name DWF5 (DWARF 5)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g50430 841465 DWF5 (DWARF 5) Mutants are defective in Brassinosteroid biosynthesis (delta7-sterol-C7 reduction step) and have a dwarf phenotype. S.X. H.G.
0.32 35.7 At3g62370 825410 unknown protein F:unknown;P:unknown;C:endomembrane system;P S.X. H.G.
0.29 30.3 At2g01720 814701 ribophorin I family protein F:oligosaccharyl transferase activity, dolichyl-diphosphooligosaccharide-protein glycotransferase activity;P:protein amino acid glycosylation;C:endoplasmic reticulum, plasma membrane, plant-type cell wall;MFOP S.X. H.G.
0.27 26.2 At5g10840 830951 endomembrane protein 70, putative F:unknown;P:unknown;C:integral to membrane, Golgi apparatus, plasma membrane, plant-type cell wall;MPOFB S.X. H.G.
0.25 22.6 At1g56330 842086 ATSAR1B (SECRETION-ASSOCIATED RAS 1 B) Encodes a small GTP-binding protein implicated in ER to cis-Golgi transport of other proteins. A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. The protein is found associated to the ER and free in the cytosol. S.X. H.G.
0.23 19.3 At5g24260 832493 prolyl oligopeptidase family protein F:serine-type peptidase activity;P:proteolysis;C:membrane;BOMFAP S.X. H.G.
0.23 19.3 At1g24360 839053 3-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductase F:3-oxoacyl-[acyl-carrier-protein] reductase activity;P:metabolic process, fatty acid biosynthetic process;C:chloroplast stroma, chloroplast, chloroplast envelope;BOMFPAV S.X. H.G.
0.23 19.3 At3g25040 822095 ER lumen protein retaining receptor, putative / HDEL receptor, putative F:ER retention sequence binding, receptor activity;P:protein retention in ER lumen, protein transport;C:endomembrane system, integral to membrane;MOFP S.X. H.G.
0.22 17.5 At2g29390 817488 SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase. S.X. H.G.
0.20 14.4 At4g24330 828536 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MFOPB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
49.8 99.8 GSM133761 Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
30.4 99.7 GSM133763 Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
17.5 99.5 GSM133979 Birnbaum_1-9_StageII-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
15.6 99.5 GSM133755 Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
13.9 99.4 GSM252692 Section of Root from 270 mm to 340 mm harvested immediately rep3 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
13.7 99.4 GSM133981 Birnbaum_1-11_StageII-4_Rep4_ATH1 GSE5749 A gene expression map of the Arabidopsis root
13.2 99.4 GSM265428 Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
12.8 99.3 GSM265420 Arabidopsis, root, longitudinal zone 2, standard conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
11.8 99.3 GSM184895 Arabidopsis, root cells, cortex, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
11.2 99.2 GSM133980 Birnbaum_1-10_StageII-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-1 38 At4g35580 829710 NTL9 (NAC transcription factor-like 9) F:transcription factor activity;P:regulation of transcription;C:unknown;P C.G. S.X.
0.01 6e-1 36 At4g05360 825884 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:unknown;C:nuclear chromosome;POFMB C.G. S.X.
0.02 6e-1 36 At2g02810 814811 UTR1 (UDP-GALACTOSE TRANSPORTER 1) Encodes a multitransmembrane hydrophobic protein that functions as transporter of UDP-galactose and UDP-glucose into the Golgi. Localized in the ER. Involved in the unfolded protein response, a mechanism that controls proper protein folding in the ER. C.G. S.X.
0.01 6e-1 36 At2g22830 816814 SQE2 (squalene epoxidase 2) F:squalene monooxygenase activity, oxidoreductase activity, FAD binding;P:sterol biosynthetic process;C:integral to membrane;BOFMPA C.G. S.X.
0.02 6e-1 36 At1g48000 841218 MYB112 (myb domain protein 112) Encodes a putative transcription factor (MYB112). C.G. S.X.
0.01 3e+0 34 At5g26830 832741 threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS) Encodes a dual-targeted threonyl-tRNA synthetase found in both the chloroplast and mitochondrion. C.G. S.X.
0.01 3e+0 34 At5g42870 834298 lipin family protein F:unknown;P:biological_process unknown;C:apoplast, membrane;MFBOP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 1e-39 165 Glycine max Gma.2146.1.S1_at BQ610855 - - 1e-39 At1g50430 DWF5 (DWARF 5) C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HVSMEi0020G22r2_at HVSMEi0020G22r2 - - 7e-1 At4g36650 ATPBRP (PLANT-SPECIFIC TFIIB-RELATED PROTEIN) C.G. S.X.
0.37 1e-31 139 Oryza sativa Os02g0465400 AK100199.1 - 7-dehydrocholesterol reductase (EC 1.3.1.21)(7-DHC reductase) (Sterol delta-7-reductase) (Dwarf5protein) 9e-32 At1g50430 DWF5 (DWARF 5) C.G. S.X.
0.52 5e-58 226 Populus trichocarpa PtpAffx.308.3.S1_at CV250507 hypothetical protein - 6e-42 At1g50430 DWF5 (DWARF 5) C.G. S.X.
0.25 3e-12 73 Triticum aestivum Ta.16711.1.S1_at BQ609868 - - 5e-12 At1g50430 DWF5 (DWARF 5) C.G. S.X.
0.34 3e-28 125 Vitis vinifera 1608804_at BQ796337 hypothetical protein LOC100256426 - 7e-28 At1g50430 DWF5 (DWARF 5) C.G. S.X.
0.27 8e-14 77 Zea mays Zm.5482.1.A1_at AI737093 7-dehydrocholesterol reductase - 3e-13 At1g50430 DWF5 (DWARF 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0016132 The chemical reactions and pathways resulting in the formation of brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects.
S GO:0016126 The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00049 Sterol Biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00100 Steroid biosynthesis
01062 Biosynthesis of terpenoids and steroids
01066 Biosynthesis of alkaloids derived from terpenoid and polyketide
01070 Biosynthesis of plant hormones
01100 Metabolic pathways
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