Gene omics information

Query gene ID At1g50430
Gene name DWF5 (DWARF 5)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g50430841465DWF5 (DWARF 5)Mutants are defective in Brassinosteroid biosynthesis (delta7-sterol-C7 reduction step) and have a dwarf phenotype.S.X.H.G.
0.3235.7At3g62370825410unknown proteinF:unknown;P:unknown;C:endomembrane system;PS.X.H.G.
0.2930.3At2g01720814701ribophorin I family proteinF:oligosaccharyl transferase activity, dolichyl-diphosphooligosaccharide-protein glycotransferase activity;P:protein amino acid glycosylation;C:endoplasmic reticulum, plasma membrane, plant-type cell wall;MFOPS.X.H.G.
0.2726.2At5g10840830951endomembrane protein 70, putativeF:unknown;P:unknown;C:integral to membrane, Golgi apparatus, plasma membrane, plant-type cell wall;MPOFBS.X.H.G.
0.2522.6At1g56330842086ATSAR1B (SECRETION-ASSOCIATED RAS 1 B)Encodes a small GTP-binding protein implicated in ER to cis-Golgi transport of other proteins. A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. The protein is found associated to the ER and free in the cytosol.S.X.H.G.
0.2319.3At5g24260832493prolyl oligopeptidase family proteinF:serine-type peptidase activity;P:proteolysis;C:membrane;BOMFAPS.X.H.G.
0.2319.3At1g243608390533-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductaseF:3-oxoacyl-[acyl-carrier-protein] reductase activity;P:metabolic process, fatty acid biosynthetic process;C:chloroplast stroma, chloroplast, chloroplast envelope;BOMFPAVS.X.H.G.
0.2319.3At3g25040822095ER lumen protein retaining receptor, putative / HDEL receptor, putativeF:ER retention sequence binding, receptor activity;P:protein retention in ER lumen, protein transport;C:endomembrane system, integral to membrane;MOFPS.X.H.G.
0.2217.5At2g29390817488SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2)Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase.S.X.H.G.
0.2014.4At4g24330828536unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MFOPBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
49.899.8GSM133761Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
30.499.7GSM133763Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
17.599.5GSM133979Birnbaum_1-9_StageII-2_Rep2_ATH1GSE5749A gene expression map of the Arabidopsis root
15.699.5GSM133755Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
13.999.4GSM252692Section of Root from 270 mm to 340 mm harvested immediately rep3GSE9996Organ regeneration in plants is independent of stem cell niche activity
13.799.4GSM133981Birnbaum_1-11_StageII-4_Rep4_ATH1GSE5749A gene expression map of the Arabidopsis root
13.299.4GSM265428Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
12.899.3GSM265420Arabidopsis, root, longitudinal zone 2, standard conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
11.899.3GSM184895Arabidopsis, root cells, cortex, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
11.299.2GSM133980Birnbaum_1-10_StageII-3_Rep3_ATH1GSE5749A gene expression map of the Arabidopsis root
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-138At4g35580829710NTL9 (NAC transcription factor-like 9)F:transcription factor activity;P:regulation of transcription;C:unknown;PC.G.S.X.
0.016e-136At4g05360825884zinc knuckle (CCHC-type) family proteinF:zinc ion binding, nucleic acid binding;P:unknown;C:nuclear chromosome;POFMBC.G.S.X.
0.026e-136At2g02810814811UTR1 (UDP-GALACTOSE TRANSPORTER 1)Encodes a multitransmembrane hydrophobic protein that functions as transporter of UDP-galactose and UDP-glucose into the Golgi. Localized in the ER. Involved in the unfolded protein response, a mechanism that controls proper protein folding in the ER.C.G.S.X.
0.016e-136At2g22830816814SQE2 (squalene epoxidase 2)F:squalene monooxygenase activity, oxidoreductase activity, FAD binding;P:sterol biosynthetic process;C:integral to membrane;BOFMPAC.G.S.X.
0.026e-136At1g48000841218MYB112 (myb domain protein 112)Encodes a putative transcription factor (MYB112).C.G.S.X.
0.013e+034At5g26830832741threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)Encodes a dual-targeted threonyl-tRNA synthetase found in both the chloroplast and mitochondrion.C.G.S.X.
0.013e+034At5g42870834298lipin family proteinF:unknown;P:biological_process unknown;C:apoplast, membrane;MFBOPC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.271e-39165Glycine maxGma.2146.1.S1_atBQ610855--1e-39At1g50430DWF5 (DWARF 5)C.G.S.X.
0.021e+034Hordeum vulgareHVSMEi0020G22r2_atHVSMEi0020G22r2--7e-1At4g36650ATPBRP (PLANT-SPECIFIC TFIIB-RELATED PROTEIN)C.G.S.X.
0.371e-31139Oryza sativaOs02g0465400AK100199.1-7-dehydrocholesterol reductase (EC 1.3.1.21)(7-DHC reductase) (Sterol delta-7-reductase) (Dwarf5protein)9e-32At1g50430DWF5 (DWARF 5)C.G.S.X.
0.525e-58226Populus trichocarpaPtpAffx.308.3.S1_atCV250507hypothetical protein-6e-42At1g50430DWF5 (DWARF 5)C.G.S.X.
0.253e-1273Triticum aestivumTa.16711.1.S1_atBQ609868--5e-12At1g50430DWF5 (DWARF 5)C.G.S.X.
0.343e-28125Vitis vinifera1608804_atBQ796337hypothetical protein LOC100256426-7e-28At1g50430DWF5 (DWARF 5)C.G.S.X.
0.278e-1477Zea maysZm.5482.1.A1_atAI7370937-dehydrocholesterol reductase-3e-13At1g50430DWF5 (DWARF 5)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0016132The chemical reactions and pathways resulting in the formation of brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects.
SGO:0016126The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00049Link to KaPPA-View 4Sterol Biosynthesis



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00100Link to KEGG PATHWAYSteroid biosynthesis
01062Link to KEGG PATHWAYBiosynthesis of terpenoids and steroids
01066Link to KEGG PATHWAYBiosynthesis of alkaloids derived from terpenoid and polyketide
01070Link to KEGG PATHWAYBiosynthesis of plant hormones
01100Link to KEGG PATHWAYMetabolic pathways
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