CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g50160

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.20 14.4 At1g50160 841438 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.57 73.8 At4g16930 827401 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P S.X. H.G.
0.46 59.8 At1g23910 839002 - F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.36 43.6 At4g02910 828141 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.33 38.1 At5g12450 831120 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
277.6 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
223.7 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
199.0 100.0 E-MEXP-509-raw-cel-829148525
194.2 100.0 E-MEXP-509-raw-cel-829148597
173.7 100.0 E-MEXP-509-raw-cel-829148385
173.5 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
173.3 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
169.6 100.0 E-MEXP-509-raw-cel-829148561
164.0 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
163.8 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 7e-3 40 At5g59050 836022 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.01 4e-1 34 At5g49760 835039 leucine-rich repeat family protein / protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, vacuole;MPOBFVA C.G. S.X.
0.01 4e-1 34 At4g30080 829131 ARF16 (AUXIN RESPONSE FACTOR 16) Involved in root cap cell differentiation. Gene expression is regulated by mir160.Located in the nucleus. C.G. S.X.
0.01 2e+0 32 At5g39770 833973 DNA binding / endonuclease/ nuclease/ nucleic acid binding / protein binding Represents a non-function pseudogene homologous to AtMSU81 (At4g30870). C.G. S.X.
0.02 2e+0 32 At2g46040 819212 ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein F:DNA binding;P:biological_process unknown;C:intracellular;PMOF C.G. S.X.
0.01 2e+0 32 At1g67890 843117 protein kinase family protein F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent;C:unknown;MPOBFVA C.G. S.X.
0.01 2e+0 32 At1g11300 837672 ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA C.G. S.X.
0.05 6e+0 30 Atmg00320 - - hypothetical protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 6e-1 34 Glycine max GmaAffx.73195.1.S1_at BI701045 - - 5e-8 At4g27250 dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family C.G. S.X.
0.04 8e-1 32 Hordeum vulgare Contig20433_at Contig20433 - - 1e+0 At2g45360 unknown protein C.G. S.X.
0.04 3e+0 32 Oryza sativa OsAffx.23041.1.S1_at - - - 0 C.G. S.X.
0.06 2e+0 32 Populus trichocarpa PtpAffx.223629.1.S1_at pmrna41708 hypothetical protein - 1e-1 At2g18360 hydrolase, alpha/beta fold family protein C.G. S.X.
0.05 2e+0 32 Triticum aestivum TaAffx.54583.1.S1_at CA679752 - - 9e-1 At1g19530 unknown protein C.G. S.X.
0.04 2e+0 30 Vitis vinifera 1612632_at CD797576 - - 9e-1 At1g09625 unknown protein C.G. S.X.
0.05 3e+0 30 Zea mays Zm.10831.1.S1_at BQ619456 - - 6e-1 At5g04347 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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