CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g50110

Gene name branched-chain amino acid aminotransferase 6 / branched-chain amino acid transaminase 6 (BCAT6)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At1g50110 841433 branched-chain amino acid aminotransferase 6 / branched-chain amino acid transaminase 6 (BCAT6) F:branched-chain-amino-acid transaminase activity, catalytic activity;P:branched chain family amino acid metabolic process, metabolic process;C:cellular_component unknown;BOFMPA S.X. H.G.
0.44 57.2 At4g36180 829775 leucine-rich repeat family protein F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.43 55.3 At1g63470 842653 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFBO S.X. H.G.
0.41 52.4 At1g63480 842654 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:unknown;PMFOBV S.X. H.G.
0.38 46.7 At1g20590 838648 cyclin, putative F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:endomembrane system, nucleus;MPOF S.X. H.G.
0.38 46.7 At2g25270 817065 unknown protein F:unknown;P:unknown;C:plasma membrane;POBM S.X. H.G.
0.37 45.0 At4g31840 829313 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;P S.X. H.G.
0.37 45.0 At1g02690 839517 IMPA-6 (IMPORTIN ALPHA ISOFORM 6) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. S.X. H.G.
0.36 43.6 At5g17160 831580 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVA S.X. H.G.
0.36 43.6 At3g06030 819774 ANP3 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 3) NPK1-related protein kinase 3 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
487.0 100.0 GSM133957 Fukuda_1-2_0B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
105.8 99.9 GSM270814 Arabidopsis cell culture, 4 h_control_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
75.1 99.9 GSM270853 Arabidopsis cell culture, 4 h_control_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
59.6 99.8 GSM133767 Lindsey_1-19_torpedo-basal_Rep4_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
56.9 99.8 GSM62705 arf6 arf8_stem GSE2848 Auxin Response Factor mediated flower gene expression
32.7 99.7 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
31.4 99.7 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
30.6 99.7 GSM142735 DH001_ATH1_A2-BCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
26.9 99.7 GSM270865 Arabidopsis cell culture, 4 h_control_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
25.4 99.6 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.83 0 938 At1g50090 841432 aminotransferase class IV family protein F:branched-chain-amino-acid transaminase activity, catalytic activity;P:branched chain family amino acid metabolic process, metabolic process;C:cellular_component unknown;BOFMPA C.G. S.X.
0.25 2e-12 73 At3g19710 821508 BCAT4 (BRANCHED-CHAIN AMINOTRANSFERASE4) Belongs to the branched-chain amino acid aminotransferase gene family. Encodes a methionine-oxo-acid transaminase. Involved in the methionine chain elongation pathway that leads to the ultimate biosynthesis of methionine-derived glucosinolates. C.G. S.X.
0.06 9e-3 42 At5g65780 836707 ATBCAT-5 encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutant C.G. S.X.
0.04 1e-1 38 At1g10060 837542 branched-chain amino acid aminotransferase 1 / branched-chain amino acid transaminase 1 (BCAT1) encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. C.G. S.X.
0.06 5e-1 36 At3g49680 824130 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 5e-2 40 Glycine max GmaAffx.93561.1.S1_at CF807977 - - 3e-6 At1g10070 ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) C.G. S.X.
0.09 3e-1 36 Hordeum vulgare Contig8040_at Contig8040 - - 6e-11 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) C.G. S.X.
0.07 7e-5 50 Oryza sativa Os05g0558400 AK072756.1 - Branched-chain-amino-acid aminotransferase 3,chloroplast precursor (EC 2.6.1.42) (Atbcat-3) 5e-24 At5g65780 ATBCAT-5 C.G. S.X.
0.08 2e-1 38 Populus trichocarpa PtpAffx.22188.1.S1_at CK104459 hypothetical protein - 1e-1 At1g50110 branched-chain amino acid aminotransferase 6 / branched-chain amino acid transaminase 6 (BCAT6) C.G. S.X.
0.02 2e+0 34 Triticum aestivum TaAffx.31713.1.S1_at CA609334 - - 2e-5 At5g33320 CUE1 (CAB UNDEREXPRESSED 1) C.G. S.X.
0.05 2e-4 46 Vitis vinifera 1622060_at BM436271 - - 3e-32 At5g65780 ATBCAT-5 C.G. S.X.
0.02 6e-2 38 Zea mays Zm.17942.1.A1_at CK827838 hypothetical protein LOC100192912 - 1e-7 At5g65780 ATBCAT-5 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
L GO:0009081 The chemical reactions and pathways involving amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00009 Leucine, valine, isoleucine and alanine biosynthesis
00077 Leucine, valine and isoleucine metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00280 Valine, leucine and isoleucine degradation
00290 Valine, leucine and isoleucine biosynthesis
00770 Pantothenate and CoA biosynthesis
01063 Biosynthesis of alkaloids derived from shikimate pathway
01065 Biosynthesis of alkaloids derived from histidine and purine
01100 Metabolic pathways
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