CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g50090

Gene name aminotransferase class IV family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.62 77.3 At1g50090 841432 aminotransferase class IV family protein F:branched-chain-amino-acid transaminase activity, catalytic activity;P:branched chain family amino acid metabolic process, metabolic process;C:cellular_component unknown;BOFMPA S.X. H.G.
0.92 96.0 At2g32610 817821 ATCSLB01 encodes a gene similar to cellulose synthase S.X. H.G.
0.91 95.6 At3g06460 819823 GNS1/SUR4 membrane family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOPV S.X. H.G.
0.90 95.1 At3g47400 823894 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBOFVMA S.X. H.G.
0.89 94.6 At1g06090 837118 fatty acid desaturase family protein F:oxidoreductase activity;P:lipid metabolic process;C:cellular_component unknown;BOMFPV S.X. H.G.
0.89 94.6 At2g32620 817822 ATCSLB02 encodes a gene similar to cellulose synthase S.X. H.G.
0.89 94.6 At5g16230 831483 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOM S.X. H.G.
0.88 94.0 At3g49190 824080 condensation domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF S.X. H.G.
0.88 94.0 At2g37700 818347 catalytic/ iron ion binding / oxidoreductase F:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOMPFV S.X. H.G.
0.88 94.0 At5g15940 831451 binding / catalytic/ oxidoreductase F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
568.3 100.0 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
540.1 100.0 GSM184480 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
405.2 100.0 GSM184481 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
402.2 100.0 GSM184483 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
265.3 100.0 GSM218590 Protoplasted root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
258.3 100.0 GSM184479 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
249.3 100.0 GSM184535 Protoplasted root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
214.3 100.0 GSM218589 Protoplasted root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
107.9 99.9 GSM184492 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
96.3 99.9 GSM218588 Protoplasted root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.83 0 938 At1g50110 841433 branched-chain amino acid aminotransferase 6 / branched-chain amino acid transaminase 6 (BCAT6) F:branched-chain-amino-acid transaminase activity, catalytic activity;P:branched chain family amino acid metabolic process, metabolic process;C:cellular_component unknown;BOFMPA C.G. S.X.
0.21 2e-12 73 At3g19710 821508 BCAT4 (BRANCHED-CHAIN AMINOTRANSFERASE4) Belongs to the branched-chain amino acid aminotransferase gene family. Encodes a methionine-oxo-acid transaminase. Involved in the methionine chain elongation pathway that leads to the ultimate biosynthesis of methionine-derived glucosinolates. C.G. S.X.
0.05 6e-4 46 At1g10060 837542 branched-chain amino acid aminotransferase 1 / branched-chain amino acid transaminase 1 (BCAT1) encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. C.G. S.X.
0.01 5e-1 36 At5g20690 832192 ATP binding / kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 5e-1 36 At3g57140 824881 patatin-related F:GTP binding;P:metabolic process, lipid metabolic process;C:cellular_component unknown;BFOPM C.G. S.X.
0.02 5e-1 36 At2g01735 814703 RIE1 (RING-FINGER PROTEIN FOR EMBRYOGENESIS) encodes a RING-H2 zinc finger protein essential for seed development. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Glycine max GmaAffx.84873.1.S1_at AW472165 - - 3e-11 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) C.G. S.X.
0.03 2e-5 50 Hordeum vulgare Contig8040_at Contig8040 - - 6e-11 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) C.G. S.X.
0.07 5e-9 63 Oryza sativa Os05g0558400 AK072756.1 - Branched-chain-amino-acid aminotransferase 3,chloroplast precursor (EC 2.6.1.42) (Atbcat-3) 5e-24 At5g65780 ATBCAT-5 C.G. S.X.
0.05 8e-4 46 Populus trichocarpa PtpAffx.41318.1.S1_a_at CV265728 hypothetical protein - 3e-53 At5g65780 ATBCAT-5 C.G. S.X.
0.04 9e-3 42 Triticum aestivum TaAffx.129191.1.S1_at CD906345 - - 3e-5 At1g10070 ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) C.G. S.X.
0.05 1e-5 50 Vitis vinifera 1622060_at BM436271 - - 3e-32 At5g65780 ATBCAT-5 C.G. S.X.
0.02 4e+0 32 Zea mays Zm.17942.1.A1_at CK827838 hypothetical protein LOC100192912 - 1e-7 At5g65780 ATBCAT-5 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
L GO:0009081 The chemical reactions and pathways involving amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00009 Leucine, valine, isoleucine and alanine biosynthesis
00077 Leucine, valine and isoleucine metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00280 Valine, leucine and isoleucine degradation
00290 Valine, leucine and isoleucine biosynthesis
00770 Pantothenate and CoA biosynthesis
01063 Biosynthesis of alkaloids derived from shikimate pathway
01065 Biosynthesis of alkaloids derived from histidine and purine
01100 Metabolic pathways
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