Gene omics information

Query gene ID At1g49910
Gene name WD-40 repeat family protein / mitotic checkpoint protein, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7586.9At1g49910841414WD-40 repeat family protein / mitotic checkpoint protein, putativeF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPAS.X.H.G.
0.6882.2At1g67630843086POLA2 (DNA POLYMERASE ALPHA 2)F:DNA binding, DNA-directed DNA polymerase activity;P:DNA replication;C:mitochondrion;MFOPS.X.H.G.
0.6478.9At3g12530820432PSF2F:molecular_function unknown;P:DNA replication;C:nucleus;MFOPS.X.H.G.
0.6277.3At1g20220838610nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:plant-type cell wall;MBOPFVAS.X.H.G.
0.6277.3At5g16690831530ORC3 (ORIGIN RECOGNITION COMPLEX SUBUNIT 3)Origin Recognition Complex subunit 3. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.S.X.H.G.
0.6075.7At1g63160842620replication factor C 40 kDa, putativeF:in 6 functions;P:DNA replication;C:DNA replication factor C complex;BOMFAPVS.X.H.G.
0.6075.7At3g03110821074XPO1BEncodes a member of the exportin family (XPO1B)which function as receptors for nuclear transport.Along with XPO1A involved in the development of male and female gametophytes.S.X.H.G.
0.5974.7At4g31400829267DNA-directed DNA polymerase/ damaged DNA bindingF:damaged DNA binding, DNA-directed DNA polymerase activity;P:DNA repair;C:unknown;MFPOBS.X.H.G.
0.5974.7At1g03110839572transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MBFOPAS.X.H.G.
0.5469.5At3g53320824500unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
280.1100.0GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
87.999.9GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
80.399.9E-ATMX-35-raw-cel-1574334832
67.999.9E-ATMX-35-raw-cel-1574334816
51.799.8GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
50.199.8GSM284393Arabidopsis GCE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
46.599.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.699.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.099.8E-MEXP-509-raw-cel-829148456
39.399.8GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.830874At3g19590821496WD-40 repeat family protein / mitotic checkpoint protein, putativeF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPAC.G.S.X.
0.028e-342At2g36310818204URH1 (URIDINE-RIBOHYDROLASE 1)F:hydrolase activity, inosine nucleosidase activity, adenosine nucleosidase activity, uridine nucleosidase activity;P:uridine catabolic process;C:cytosol;BOMFPAC.G.S.X.
0.023e-240At1g80670844406transducin family protein / WD-40 repeat family proteinThis gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligaseC.G.S.X.
0.015e-136At5g60410836163SIZ1Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis. Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation.C.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.453e-52206Glycine maxGmaAffx.14830.1.S1_atBE659347--3e-42At1g49910WD-40 repeat family protein / mitotic checkpoint protein, putativeC.G.S.X.
0.311e-27123Hordeum vulgareContig7497_atContig7497--8e-47At3g19590WD-40 repeat family protein / mitotic checkpoint protein, putativeC.G.S.X.
0.242e-35151Oryza sativaOs.24563.1.S1_at---0C.G.S.X.
0.672e-106387Populus trichocarpaPtpAffx.204723.1.S1_x_atpmrna9307hypothetical protein-2e-96At1g49910WD-40 repeat family protein / mitotic checkpoint protein, putativeC.G.S.X.
0.152e-1273Triticum aestivumTaAffx.116089.1.S1_atCF133348--3e-5At3g19590WD-40 repeat family protein / mitotic checkpoint protein, putativeC.G.S.X.
0.022e+032Vitis vinifera1608652_atCF609124--1e+1At5g43070WPP1 (WPP domain protein 1)C.G.S.X.
0.312e-54212Zea maysZm.2700.1.A1_atAY107115.1mitotic checkpoint protein BUB3-2e-48At3g19590WD-40 repeat family protein / mitotic checkpoint protein, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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