CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g49910

Gene name WD-40 repeat family protein / mitotic checkpoint protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.75 86.9 At1g49910 841414 WD-40 repeat family protein / mitotic checkpoint protein, putative F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPA S.X. H.G.
0.68 82.2 At1g67630 843086 POLA2 (DNA POLYMERASE ALPHA 2) F:DNA binding, DNA-directed DNA polymerase activity;P:DNA replication;C:mitochondrion;MFOP S.X. H.G.
0.64 78.9 At3g12530 820432 PSF2 F:molecular_function unknown;P:DNA replication;C:nucleus;MFOP S.X. H.G.
0.62 77.3 At1g20220 838610 nucleic acid binding F:nucleic acid binding;P:biological_process unknown;C:plant-type cell wall;MBOPFVA S.X. H.G.
0.62 77.3 At5g16690 831530 ORC3 (ORIGIN RECOGNITION COMPLEX SUBUNIT 3) Origin Recognition Complex subunit 3. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b. S.X. H.G.
0.60 75.7 At1g63160 842620 replication factor C 40 kDa, putative F:in 6 functions;P:DNA replication;C:DNA replication factor C complex;BOMFAPV S.X. H.G.
0.60 75.7 At3g03110 821074 XPO1B Encodes a member of the exportin family (XPO1B)which function as receptors for nuclear transport.Along with XPO1A involved in the development of male and female gametophytes. S.X. H.G.
0.59 74.7 At4g31400 829267 DNA-directed DNA polymerase/ damaged DNA binding F:damaged DNA binding, DNA-directed DNA polymerase activity;P:DNA repair;C:unknown;MFPOB S.X. H.G.
0.59 74.7 At1g03110 839572 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MBFOPA S.X. H.G.
0.54 69.5 At3g53320 824500 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
280.1 100.0 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
87.9 99.9 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
80.3 99.9 E-ATMX-35-raw-cel-1574334832
67.9 99.9 E-ATMX-35-raw-cel-1574334816
51.7 99.8 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
50.1 99.8 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
46.5 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.6 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.0 99.8 E-MEXP-509-raw-cel-829148456
39.3 99.8 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.83 0 874 At3g19590 821496 WD-40 repeat family protein / mitotic checkpoint protein, putative F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPA C.G. S.X.
0.02 8e-3 42 At2g36310 818204 URH1 (URIDINE-RIBOHYDROLASE 1) F:hydrolase activity, inosine nucleosidase activity, adenosine nucleosidase activity, uridine nucleosidase activity;P:uridine catabolic process;C:cytosol;BOMFPA C.G. S.X.
0.02 3e-2 40 At1g80670 844406 transducin family protein / WD-40 repeat family protein This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase C.G. S.X.
0.01 5e-1 36 At5g60410 836163 SIZ1 Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis. Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 3e-52 206 Glycine max GmaAffx.14830.1.S1_at BE659347 - - 3e-42 At1g49910 WD-40 repeat family protein / mitotic checkpoint protein, putative C.G. S.X.
0.31 1e-27 123 Hordeum vulgare Contig7497_at Contig7497 - - 8e-47 At3g19590 WD-40 repeat family protein / mitotic checkpoint protein, putative C.G. S.X.
0.24 2e-35 151 Oryza sativa Os.24563.1.S1_at - - - 0 C.G. S.X.
0.67 2e-106 387 Populus trichocarpa PtpAffx.204723.1.S1_x_at pmrna9307 hypothetical protein - 2e-96 At1g49910 WD-40 repeat family protein / mitotic checkpoint protein, putative C.G. S.X.
0.15 2e-12 73 Triticum aestivum TaAffx.116089.1.S1_at CF133348 - - 3e-5 At3g19590 WD-40 repeat family protein / mitotic checkpoint protein, putative C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1608652_at CF609124 - - 1e+1 At5g43070 WPP1 (WPP domain protein 1) C.G. S.X.
0.31 2e-54 212 Zea mays Zm.2700.1.A1_at AY107115.1 mitotic checkpoint protein BUB3 - 2e-48 At3g19590 WD-40 repeat family protein / mitotic checkpoint protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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