Gene omics information

Query gene ID At1g49820
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g49820841405ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)encodes 5-methylthioribose kinase, involved in methionine cycleS.X.H.G.
0.3846.7At3g53610824529ATRAB8GTPase AtRAB8 (atrab8)S.X.H.G.
0.3643.6At1g50940841516ETFALPHA (electron transfer flavoprotein alpha)Encodes the electron transfer flavoprotein ETF alpha, a putative subunit of the mitochondrial electron transfer flavoprotein complex (ETF beta is At5g43430.1) in Arabidopsis. Mutations of the ETF beta gene results in accelerated senescence and early death compared to wild-type during extended darkness.S.X.H.G.
0.3643.6At5g63680836488pyruvate kinase, putativeF:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:response to cadmium ion, glycolysis;C:plasma membrane;BOMPFAS.X.H.G.
0.3133.8At2g01710814700DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BMOPFAVS.X.H.G.
0.2830.3At1g78150844151unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PFMS.X.H.G.
0.2726.2At4g26620828769sucrase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOAS.X.H.G.
0.2624.4At2g44680819076CKB4 (CASEIN KINASE II BETA SUBUNIT 4)Encodes casein kinase II beta chain, a CK2 regulatory subunit. Nuclear-localized CKB4 protein exists in vivo as different isoforms, resulting from phosphorylation on serine residues. The phosphorylated isoforms are the preferred substrate for ubiquitination and degradation by the proteasome pathway. Involved in regulation of circadian clock.S.X.H.G.
0.2522.6At4g02980828120ABP1 (ENDOPLASMIC RETICULUM AUXIN BINDING PROTEIN 1)auxin binding protein involved in cell elongation and cell divisionS.X.H.G.
0.2420.7At2g16460816144metal ion bindingF:metal ion binding;P:biological_process unknown;C:mitochondrion, plasma membrane;MFPOBS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
89.899.9GSM270868Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2GSE10719Response of Arabidopsis cell culture to phytoprostane A1
49.799.8GSM270870Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3GSE10719Response of Arabidopsis cell culture to phytoprostane A1
39.499.8GSM142902WW001_ATH1_A1-WILLA-CONGSE6181Assembly of the cell wall pectic matrix.
39.099.8GSM270853Arabidopsis cell culture, 4 h_control_rep2GSE10719Response of Arabidopsis cell culture to phytoprostane A1
36.899.7GSM270814Arabidopsis cell culture, 4 h_control_rep1GSE10719Response of Arabidopsis cell culture to phytoprostane A1
34.499.7GSM142904WW002_ATH1_A1-willa-CON-REP2GSE6181Assembly of the cell wall pectic matrix.
33.799.7GSM75519slr-1 0h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.022e-138At5g39830833979DEG8Encodes DEG8. Forms a hexamer with DEG5 in the thylakoid lumen. Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII). Recombinant DEG8 is proteolytically active toward both a model substrate (beta-casein) and photodamaged D1 protein of photosystem II.C.G.S.X.
0.012e-138At3g09140820068unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.012e-138At2g34030817964calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;PMOFBAC.G.S.X.
0.016e-136At1g14920838057GAI (GIBBERELLIC ACID INSENSITIVE)Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. GAI may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA.C.G.S.X.
0.013e+034At5g10190830883transporter-relatedF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:biological_process unknown;C:membrane;BOMFAPVC.G.S.X.
0.013e+034At5g04140830292GLU1 (GLUTAMATE SYNTHASE 1)Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression in leaves is induced by light and sucrose. Proposed to be involved in photorespiration and nitrogen assimilation.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.375e-24113Glycine maxGmaAffx.1306.2.S1_atBE801081--3e-24At1g49820ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)C.G.S.X.
0.142e-859Hordeum vulgareContig5719_atContig5719--6e-8At1g49820ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)C.G.S.X.
0.163e-448Oryza sativaOs04g0669800AK067649.1-5-methylthioribose kinase family protein2e-4At1g49820ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)C.G.S.X.
0.374e-1893Populus trichocarpaPtp.2395.1.S1_atCK092689hypothetical protein-4e-18At1g49820ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)C.G.S.X.
0.087e-446Triticum aestivumTa.9428.2.S1_a_atCA647517--3e-4At1g49820ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)C.G.S.X.
0.457e-35147Vitis vinifera1613908_atCF403483hypothetical protein LOC100242426-3e-34At1g49820ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)C.G.S.X.
0.138e-1477Zea maysZm.2382.2.A1_atCK368048methylthioribose kinase-2e-13At1g49820ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0019509The generation of L-methionine (2-amino-4-(methylthio)butanoic acid) from methylthioadenosine.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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