CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g49820

Gene name ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g49820 841405 ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE) encodes 5-methylthioribose kinase, involved in methionine cycle S.X. H.G.
0.38 46.7 At3g53610 824529 ATRAB8 GTPase AtRAB8 (atrab8) S.X. H.G.
0.36 43.6 At1g50940 841516 ETFALPHA (electron transfer flavoprotein alpha) Encodes the electron transfer flavoprotein ETF alpha, a putative subunit of the mitochondrial electron transfer flavoprotein complex (ETF beta is At5g43430.1) in Arabidopsis. Mutations of the ETF beta gene results in accelerated senescence and early death compared to wild-type during extended darkness. S.X. H.G.
0.36 43.6 At5g63680 836488 pyruvate kinase, putative F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:response to cadmium ion, glycolysis;C:plasma membrane;BOMPFA S.X. H.G.
0.31 33.8 At2g01710 814700 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BMOPFAV S.X. H.G.
0.28 30.3 At1g78150 844151 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PFM S.X. H.G.
0.27 26.2 At4g26620 828769 sucrase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOA S.X. H.G.
0.26 24.4 At2g44680 819076 CKB4 (CASEIN KINASE II BETA SUBUNIT 4) Encodes casein kinase II beta chain, a CK2 regulatory subunit. Nuclear-localized CKB4 protein exists in vivo as different isoforms, resulting from phosphorylation on serine residues. The phosphorylated isoforms are the preferred substrate for ubiquitination and degradation by the proteasome pathway. Involved in regulation of circadian clock. S.X. H.G.
0.25 22.6 At4g02980 828120 ABP1 (ENDOPLASMIC RETICULUM AUXIN BINDING PROTEIN 1) auxin binding protein involved in cell elongation and cell division S.X. H.G.
0.24 20.7 At2g16460 816144 metal ion binding F:metal ion binding;P:biological_process unknown;C:mitochondrion, plasma membrane;MFPOB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
89.8 99.9 GSM270868 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
51.8 99.8 E-MEXP-1797-raw-cel-1669768084
49.7 99.8 GSM270870 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
39.4 99.8 GSM142902 WW001_ATH1_A1-WILLA-CON GSE6181 Assembly of the cell wall pectic matrix.
39.0 99.8 GSM270853 Arabidopsis cell culture, 4 h_control_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
37.4 99.7 E-ATMX-31-raw-cel-1516947899
36.8 99.7 GSM270814 Arabidopsis cell culture, 4 h_control_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
34.4 99.7 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
33.7 99.7 GSM75519 slr-1 0h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
30.3 99.7 E-MEXP-1797-raw-cel-1669767994
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e-1 38 At5g39830 833979 DEG8 Encodes DEG8. Forms a hexamer with DEG5 in the thylakoid lumen. Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII). Recombinant DEG8 is proteolytically active toward both a model substrate (beta-casein) and photodamaged D1 protein of photosystem II. C.G. S.X.
0.01 2e-1 38 At3g09140 820068 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e-1 38 At2g34030 817964 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;PMOFBA C.G. S.X.
0.01 6e-1 36 At1g14920 838057 GAI (GIBBERELLIC ACID INSENSITIVE) Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. GAI may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. C.G. S.X.
0.01 3e+0 34 At5g10190 830883 transporter-related F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:biological_process unknown;C:membrane;BOMFAPV C.G. S.X.
0.01 3e+0 34 At5g04140 830292 GLU1 (GLUTAMATE SYNTHASE 1) Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression in leaves is induced by light and sucrose. Proposed to be involved in photorespiration and nitrogen assimilation. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.37 5e-24 113 Glycine max GmaAffx.1306.2.S1_at BE801081 - - 3e-24 At1g49820 ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE) C.G. S.X.
0.14 2e-8 59 Hordeum vulgare Contig5719_at Contig5719 - - 6e-8 At1g49820 ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE) C.G. S.X.
0.16 3e-4 48 Oryza sativa Os04g0669800 AK067649.1 - 5-methylthioribose kinase family protein 2e-4 At1g49820 ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE) C.G. S.X.
0.37 4e-18 93 Populus trichocarpa Ptp.2395.1.S1_at CK092689 hypothetical protein - 4e-18 At1g49820 ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE) C.G. S.X.
0.08 7e-4 46 Triticum aestivum Ta.9428.2.S1_a_at CA647517 - - 3e-4 At1g49820 ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE) C.G. S.X.
0.45 7e-35 147 Vitis vinifera 1613908_at CF403483 hypothetical protein LOC100242426 - 3e-34 At1g49820 ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE) C.G. S.X.
0.13 8e-14 77 Zea mays Zm.2382.2.A1_at CK368048 methylthioribose kinase - 2e-13 At1g49820 ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0019509 The generation of L-methionine (2-amino-4-(methylthio)butanoic acid) from methylthioadenosine.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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