Gene omics information

Query gene ID At1g49800
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g49800841403unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
1.00100.0At5g47350834782palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOS.X.H.G.
0.8089.8At3g49270824088unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOS.X.H.G.
0.8089.8At4g32170829349CYP96A2member of CYP96AS.X.H.G.
0.6781.6At1g24540839069CYP86C1member of CYP86CS.X.H.G.
0.6781.6At4g15750827253invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;POS.X.H.G.
0.6378.1At1g17260838297AHA10 (Autoinhibited H(+)-ATPase isoform 10)belongs to H+-APTase gene family, involved in proanthocyanidin biosynthesis, disturbs the vacuolar biogenesis and acidification processS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
1053.7100.0GSM284398Arabidopsis GGSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
615.5100.0GSM311284Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
536.9100.0GSM284397Arabidopsis GGSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
386.8100.0GSM311286Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
363.9100.0GSM311283Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
286.5100.0GSM147966lec1-1 Globular Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
268.7100.0GSM147963WT Globular Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
224.4100.0GSM147964WT Globular Stage Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
159.299.9GSM147965lec1-1 Globular Stage Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
128.799.9GSM311285Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.024e-238At5g05390830421LAC12 (laccase 12)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).C.G.S.X.
0.026e-134At4g34400829590DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MOBFPVAC.G.S.X.
0.022e+032At5g41060834108zinc finger (DHHC type) family proteinF:zinc ion binding;P:unknown;C:plasma membrane;MOFPC.G.S.X.
0.032e+032At4g36590829811MADS-box protein (AGL40)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOC.G.S.X.
0.012e+032At1g75370843873SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putativeF:transporter activity;P:transport;C:plasma membrane;MPFOC.G.S.X.
0.041e+130At5g422423771402LCR57 (Low-molecular-weight cysteine-rich 57)Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.C.G.S.X.
0.031e+130At5g44860834516unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.033e+032Glycine maxGmaAffx.87851.1.S1_atCA801444--2e-8At5g37510EMB1467 (embryo defective 1467)C.G.S.X.
0.093e-134Hordeum vulgarerbaal14h13_x_atrbaal14h13--2e-1At1g49800unknown proteinC.G.S.X.
0.055e+032Oryza sativaOs01g0971000CR288784--1e+0At3g61860RSP31C.G.S.X.
0.066e-238Populus trichocarpaPtpAffx.201169.1.S1_atpmrna2304hypothetical protein-6e-1At3g16040-C.G.S.X.
0.053e+032Triticum aestivumTa.9718.2.S1_x_atCA737941--2e-31At1g29910CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3)C.G.S.X.
0.043e+030Vitis vinifera1614149_atCF513013hypothetical protein LOC100264613-2e-63At2g01320ABC transporter family proteinC.G.S.X.
0.021e+032Zea maysZm.19167.1.A1_a_atAI629472hypothetical protein LOC100194096-1e-17At4g10000electron carrier/ protein disulfide oxidoreductaseC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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