Gene omics information

Query gene ID At1g49600
Gene name ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At1g49600841384ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a)F:RNA binding;P:unknown;C:unknown;MOPFBVAS.X.H.G.
0.6781.6At2g47420819355dimethyladenosine transferase, putativeF:rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, rRNA (adenine) methyltransferase activity;P:rRNA modification, rRNA processing;C:cellular_component unknown;BOMAFPS.X.H.G.
0.6781.6At4g11240826726TOPP7encodes a type I serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.S.X.H.G.
0.4050.8At5g13780831223GCN5-related N-acetyltransferase, putativeF:N-acetyltransferase activity;P:metabolic process;C:endomembrane system;MOFBAPS.X.H.G.
0.3338.1At5g62190836340PRH75DEAD/DEAH box RNA helicase PRH75S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
30.699.7GSM133313RIKEN-LI2AGSE5701AtGenExpress: Basic hormone treatment of seeds
28.599.7GSM133319RIKEN-LI5AGSE5701AtGenExpress: Basic hormone treatment of seeds
23.299.6GSM133321RIKEN-LI6AGSE5701AtGenExpress: Basic hormone treatment of seeds
22.299.6GSM133311RIKEN-LI1AGSE5701AtGenExpress: Basic hormone treatment of seeds
21.399.6GSM133305RIKEN-NAKABAYASHI2AGSE5700AtGenExpress: Effect of ABA during seed imbibition
20.199.6GSM133317RIKEN-LI4AGSE5701AtGenExpress: Basic hormone treatment of seeds
19.899.6GSM133306RIKEN-NAKABAYASHI2BGSE5700AtGenExpress: Effect of ABA during seed imbibition
18.899.5GSM133307RIKEN-NAKABAYASHI3AGSE5700AtGenExpress: Effect of ABA during seed imbibition
17.699.5GSM133120RIKEN-YAMAUCHI2BGSE5687AtGenExpress: Different temperature treatment of seeds
17.499.5GSM133308RIKEN-NAKABAYASHI4AGSE5700AtGenExpress: Effect of ABA during seed imbibition
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.622e-121436At3g19130821447ATRBP47B (RNA-binding protein 47B)F:RNA binding;P:unknown;C:unknown;MOPFBAVC.G.S.X.
0.084e-550At1g47490841157ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C)F:RNA binding;P:unknown;C:unknown;MPFOBVAC.G.S.X.
0.072e-448At5g54900835581ATRBP45A (RNA-binding protein 45A)F:RNA binding;P:unknown;C:unknown;MPFOBAC.G.S.X.
0.107e-446At1g47500841159ATRBP47C' (RNA-binding protein 47C')F:RNA binding;P:unknown;C:unknown;MPFOBVAC.G.S.X.
0.014e-240At5g48300834883ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1)Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS1 is the major small subunit isoform present in all plant tissues tested.C.G.S.X.
0.014e-240At5g57200835826epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedF:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:N-terminal protein myristoylation, clathrin coat assembly;C:clathrin coat;MOFVPBAC.G.S.X.
0.014e-240At5g10510830915AIL6 (AINTEGUMENTA-LIKE 6)Encodes an AP2-domain transcription factor involved in root stem cell identity and root development.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.146e-550Glycine maxGmaAffx.93586.1.S1_atCF809311--2e-5At1g49600ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a)C.G.S.X.
0.055e-342Hordeum vulgareContig3031_s_atContig3031--9e-4At1g11650RNA-binding protein 45 (RBP45), putativeC.G.S.X.
0.069e-550Oryza sativaOs02g0567900AK060161.1-RNA Binding Protein 475e-5At1g49600ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a)C.G.S.X.
0.225e-24113Populus trichocarpaPtp.3190.1.S1_s_atCV267181hypothetical protein-5e-14At3g19130ATRBP47B (RNA-binding protein 47B)C.G.S.X.
0.054e-240Triticum aestivumTa.10005.1.S1_atCK166642--2e-5At1g47490ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C)C.G.S.X.
0.171e-24113Vitis vinifera1608677_atCB977949hypothetical protein LOC100258930-3e-22At3g19130ATRBP47B (RNA-binding protein 47B)C.G.S.X.
0.068e-857Zea maysZm.14069.1.S1_a_atAI734511hypothetical protein LOC100274401-2e-7At1g49600ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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