Gene omics information

Query gene ID At1g49490
Gene name leucine-rich repeat family protein / extensin family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.9396.4At1g49490841373leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MBPOFVAS.X.H.G.
0.6176.7At3g25165822108RALFL25 (ralf-like 25)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.S.X.H.G.
0.5873.8At4g24640828566APPB1Encodes AppB protein (AppB1).S.X.H.G.
0.5673.0At1g51240841547-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.5673.0At3g26110822209-F:molecular_function unknown;P:unknown;C:anchored to membrane;PS.X.H.G.
0.5469.5At2g46360819243unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.5065.3At2g26850817226F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOS.X.H.G.
0.4050.8At3g25170822109RALFL26 (ralf-like 26)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.S.X.H.G.
0.3541.6At3g16040820849-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOS.X.H.G.
0.3235.7At5g54095835496unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;OBMFPVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
369.6100.0GSM154507Arabidopsis growing pollen tubes rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
211.0100.0GSM154505Arabidopsis hydrated pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
198.0100.0E-MEXP-1138-raw-cel-1432772522
192.9100.0E-MEXP-1138-raw-cel-1432772586
174.6100.0E-MEXP-1138-raw-cel-1432772554
173.6100.0E-MEXP-1138-raw-cel-1432772650
165.9100.0E-MEXP-1138-raw-cel-1432772746
162.999.9E-MEXP-1138-raw-cel-1432772810
162.599.9E-MEXP-1138-raw-cel-1432772906
150.399.9E-MEXP-1138-raw-cel-1432772714
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.342e-54214At3g19020821435leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MBOPFVAC.G.S.X.
0.039e-859At1g62440842542LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2)encodes a paralog of LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) which acts synergistically with LRX1 in root hair cell morphogenesis.C.G.S.X.
0.038e-550At1g12040837756LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1)encodes a a chimeric leucine-rich repeat/extensin protein that regulates root hair morphogenesis and elongation. Null mutants develop root hairs that frequently abort, swell, or branch. Gene is expressed in root hair cells and protein is specifically localized in the wall of the hair proper.C.G.S.X.
0.053e-448At4g18670827601protein binding / structural constituent of cell wallF:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MBPFOVAC.G.S.X.
0.033e-448At2g15880816084leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MPBOFVAC.G.S.X.
0.031e-346At3g24480822038leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;PMOBFVAC.G.S.X.
0.125e-344At4g33970829543protein binding / structural constituent of cell wallF:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MPBOFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e-140Glycine maxGmaAffx.65716.1.A1_x_atCA853286--5e-5At5g35190proline-rich extensin-like family proteinC.G.S.X.
0.012e-138Hordeum vulgareContig24654_atContig24654--1e-1At1g28460AGL59 (AGAMOUS-LIKE 59)C.G.S.X.
0.026e-138Oryza sativaOs01g0594401NM_192607.1--1e+0At5g58412-C.G.S.X.
0.113e-552Populus trichocarpaPtpAffx.204647.1.S1_atpmrna9138hypothetical protein-6e-27At2g15880leucine-rich repeat family protein / extensin family proteinC.G.S.X.
0.012e-242Triticum aestivumTa.26592.1.A1_atCD491303--8e-2At1g66400calmodulin-related protein, putativeC.G.S.X.
0.014e-446Vitis vinifera1622037_s_atCF205545.1hypothetical protein LOC100260578-3e-16At2g33270ACHT3 (ATYPICAL CYS HIS RICH THIOREDOXIN 3)C.G.S.X.
0.014e-240Zea maysZm.15504.1.A1_atCA404617gamma-thionins family protein-4e+0At1g80440kelch repeat-containing F-box family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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