CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g49450

Gene name transducin family protein / WD-40 repeat family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At1g49450 841369 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPA S.X. H.G.
0.33 38.1 At3g63060 825481 EDL3 (EID1-like 3) F:unknown;P:unknown;C:unknown;P S.X. H.G.
0.25 22.6 At4g36740 829827 ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. S.X. H.G.
0.13 5.8 At4g16680 827370 RNA helicase, putative F:in 7 functions;P:unknown;C:cellular_component unknown;MBOFVPA S.X. H.G.
0.09 2.8 At2g29380 817487 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV S.X. H.G.
0.07 1.9 At1g07430 837255 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
333.8 100.0 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
281.2 100.0 GSM131329 AtGen_6-3621_Saltstress-Roots-24.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
275.7 100.0 GSM131326 AtGen_6-3522_Saltstress-Roots-12.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
234.2 100.0 GSM131317 AtGen_6-3321_Saltstress-Roots-3.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
214.8 100.0 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
168.0 100.0 GSM131330 AtGen_6-3622_Saltstress-Roots-24.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
146.8 99.9 GSM131325 AtGen_6-3521_Saltstress-Roots-12.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
127.4 99.9 GSM131290 AtGen_6-2222_Osmoticstress-Roots-1.0h_Rep2 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
111.3 99.9 E-MEXP-475-raw-cel-680982485
108.6 99.9 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.63 1e-134 480 At3g18950 821427 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFBOPA C.G. S.X.
0.14 3e-9 63 At3g50390 824203 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MFBOPA C.G. S.X.
0.03 2e-4 48 At2g26490 817190 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MFOBPA C.G. S.X.
0.01 2e-1 38 At4g20450 827793 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.07 2e-1 38 At4g34380 829588 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MFBOPA C.G. S.X.
0.02 2e-1 38 At4g03630 825663 root nodule development protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB C.G. S.X.
0.01 7e-1 36 At5g44690 834498 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA C.G. S.X.
0.01 7e-1 36 At5g42140 834219 zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein F:chromatin binding, phosphoinositide binding, zinc ion binding, Ran GTPase binding;P:signal transduction;C:unknown;MOPBFAV C.G. S.X.
0.02 7e-1 36 At5g11590 831031 TINY2 (TINY2) encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 38 Glycine max GmaAffx.75422.1.S1_at AW318210 - - 1e-5 At3g57400 unknown protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig22222_at Contig22222 - - 1e+0 At5g64160 unknown protein C.G. S.X.
0.02 1e+0 36 Oryza sativa Os01g0946100 AK072248.1 - WD40-like domain containing protein 8e-1 At3g51930 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.08 7e-8 59 Populus trichocarpa PtpAffx.204642.1.S1_s_at pmrna9128 hypothetical protein - 6e-4 At3g18950 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.03 3e+0 34 Triticum aestivum TaAffx.81486.1.S1_at CA685486 - - 2e-1 At1g35614 unknown protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1612349_at CF518751 - - 2e-1 At1g74560 NRP1 (NAP1-RELATED PROTEIN 1) C.G. S.X.
0.02 1e+0 34 Zea mays Zm.7538.1.A1_at BM337034 hypothetical protein LOC100277956 - 1e+0 At4g03630 root nodule development protein-related C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage