Gene omics information

Query gene ID At1g49450
Gene name transducin family protein / WD-40 repeat family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3338.1At1g49450841369transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPAS.X.H.G.
0.3338.1At3g63060825481EDL3 (EID1-like 3)F:unknown;P:unknown;C:unknown;PS.X.H.G.
0.2522.6At4g36740829827ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.S.X.H.G.
0.135.8At4g16680827370RNA helicase, putativeF:in 7 functions;P:unknown;C:cellular_component unknown;MBOFVPAS.X.H.G.
0.092.8At2g29380817487protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVS.X.H.G.
0.071.9At1g07430837255protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
333.8100.0GSM131321AtGen_6-3421_Saltstress-Roots-6.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)
281.2100.0GSM131329AtGen_6-3621_Saltstress-Roots-24.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)
275.7100.0GSM131326AtGen_6-3522_Saltstress-Roots-12.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)
234.2100.0GSM131317AtGen_6-3321_Saltstress-Roots-3.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)
214.8100.0GSM131322AtGen_6-3422_Saltstress-Roots-6.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)
168.0100.0GSM131330AtGen_6-3622_Saltstress-Roots-24.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)
146.899.9GSM131325AtGen_6-3521_Saltstress-Roots-12.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)
127.499.9GSM131290AtGen_6-2222_Osmoticstress-Roots-1.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
111.399.9E-MEXP-475-raw-cel-680982485
108.699.9GSM131318AtGen_6-3322_Saltstress-Roots-3.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.631e-134480At3g18950821427transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFBOPAC.G.S.X.
0.143e-963At3g50390824203transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MFBOPAC.G.S.X.
0.032e-448At2g26490817190transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MFOBPAC.G.S.X.
0.012e-138At4g20450827793leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.072e-138At4g34380829588transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MFBOPAC.G.S.X.
0.022e-138At4g03630825663root nodule development protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBC.G.S.X.
0.017e-136At5g44690834498unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAC.G.S.X.
0.017e-136At5g42140834219zinc finger protein, putative / regulator of chromosome condensation (RCC1) family proteinF:chromatin binding, phosphoinositide binding, zinc ion binding, Ran GTPase binding;P:signal transduction;C:unknown;MOPBFAVC.G.S.X.
0.027e-136At5g11590831031TINY2 (TINY2)encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e-138Glycine maxGmaAffx.75422.1.S1_atAW318210--1e-5At3g57400unknown proteinC.G.S.X.
0.021e+034Hordeum vulgareContig22222_atContig22222--1e+0At5g64160unknown proteinC.G.S.X.
0.021e+036Oryza sativaOs01g0946100AK072248.1-WD40-like domain containing protein8e-1At3g51930transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.087e-859Populus trichocarpaPtpAffx.204642.1.S1_s_atpmrna9128hypothetical protein-6e-4At3g18950transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.033e+034Triticum aestivumTaAffx.81486.1.S1_atCA685486--2e-1At1g35614unknown proteinC.G.S.X.
0.023e+032Vitis vinifera1612349_atCF518751--2e-1At1g74560NRP1 (NAP1-RELATED PROTEIN 1)C.G.S.X.
0.021e+034Zea maysZm.7538.1.A1_atBM337034hypothetical protein LOC100277956-1e+0At4g03630root nodule development protein-relatedC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage