CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g49150

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g49150 841338 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.02 0.4 At1g32950 840189 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOAFM S.X. H.G.
0.01 0.2 At1g31280 840016 AGO2 (argonaute 2) An Argonaute gene S.X. H.G.
0.01 0.2 At5g20910 832215 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:nucleus;PMOFV S.X. H.G.
0.00 0.0 At5g58210 835933 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
512.0 100.0 E-MEXP-739-raw-cel-1099467384
303.5 100.0 E-MEXP-739-raw-cel-1099467393
211.3 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
208.0 100.0 E-MEXP-739-raw-cel-1099467339
156.4 99.9 E-MEXP-739-raw-cel-1099467375
150.9 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
147.2 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
146.7 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
144.5 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
134.8 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 3e-3 42 At1g72800 843611 nuM1-related F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PBFMOAV C.G. S.X.
0.01 2e-1 36 At2g34220 817983 MEE20 (maternal effect embryo arrest 20) F:molecular_function unknown;P:embryonic development ending in seed dormancy, pollen development;C:nucleus;P C.G. S.X.
0.02 9e-1 34 At5g49500 835010 signal recognition particle 54 kDa protein 2 / SRP54 (SRP-54B) F:7S RNA binding, mRNA binding, GTP binding;P:SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition, SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle, signal recognition particle, endoplasmic reticulum targeting;BOAMFP C.G. S.X.
0.01 9e-1 34 At4g33330 829469 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:endomembrane system;PMFBVO C.G. S.X.
0.02 9e-1 34 At4g35500 829702 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVA C.G. S.X.
0.02 9e-1 34 At4g35350 829688 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) tracheary element vacuolar protein C.G. S.X.
0.02 9e-1 34 At4g08760 826445 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 8e-2 38 Glycine max GmaAffx.27137.1.S1_at BM891108 - - 7e-2 At1g49150 unknown protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare Contig8558_s_at Contig8558 - - 3e+0 At1g49150 unknown protein C.G. S.X.
0.05 2e+0 34 Oryza sativa OsAffx.23991.1.S1_at - - - 0 C.G. S.X.
0.03 1e+0 34 Populus trichocarpa PtpAffx.207982.1.S1_s_at pmrna15845 hypothetical protein - 5e-28 At1g13580 LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.110461.1.S1_at CA658715 - - 3e+0 At1g49150 unknown protein C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1615708_s_at CF605377 - - 4e+0 At4g08230 glycine-rich protein C.G. S.X.
0.03 4e-1 34 Zea mays Zm.4323.1.S1_at AY110219.1 - - 2e+0 At1g49150 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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