CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g49030

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.54 69.5 At1g49030 841326 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO S.X. H.G.
0.40 50.8 At1g55380 841985 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPFVA S.X. H.G.
0.38 46.7 At1g66450 842963 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.35 41.6 At1g66440 842962 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PFO S.X. H.G.
0.33 38.1 At3g06990 819884 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;POM S.X. H.G.
0.32 35.7 At1g33610 840255 protein binding F:protein binding;P:signal transduction;C:endomembrane system;PMOBFAV S.X. H.G.
0.29 30.3 At4g13130 826927 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:chloroplast envelope;PMO S.X. H.G.
0.27 26.2 At5g01490 831754 CAX4 (CATION EXCHANGER 4) Encodes a cation/proton antiporter, a member of Low affinity calcium antiporter CAX2 family. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
341.7 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
135.0 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
122.3 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
120.8 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
114.3 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
106.6 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
106.2 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
92.4 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
91.3 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
88.7 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.30 4e-22 105 At3g18470 821376 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO C.G. S.X.
0.26 6e-18 91 At3g18460 821375 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO C.G. S.X.
0.22 2e-9 63 At3g18450 821374 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO C.G. S.X.
0.04 3e-1 36 At4g31280 829255 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 3e-1 36 At1g30680 839948 toprim domain-containing protein F:DNA helicase activity, nucleic acid binding, ATP binding;P:DNA replication, DNA metabolic process;C:unknown;OVBMP C.G. S.X.
0.02 3e-1 36 At1g09640 837491 elongation factor 1B-gamma, putative / eEF-1B gamma, putative F:translation elongation factor activity;P:translational elongation;C:plasma membrane;BMOPFA C.G. S.X.
0.01 1e+0 34 At5g07400 830631 forkhead-associated domain-containing protein / FHA domain-containing protein F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, phosphoric diester hydrolase activity, zinc ion binding, nucleic acid binding;P:DNA repair;C:nucleus;MFOPB C.G. S.X.
0.01 1e+0 34 At5g12180 831091 CPK17 member of Calcium Dependent Protein Kinase C.G. S.X.
0.04 1e+0 34 At5g35525 833517 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max HgAffx.16468.1.S1_at CB376345 - - 2e-1 At2g15345 enzyme inhibitor/ pectinesterase C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HW09H22u_at HW09H22u - - 1e+0 At4g13230 late embryogenesis abundant domain-containing protein / LEA domain-containing protein C.G. S.X.
0.03 7e-1 36 Oryza sativa Os.26810.1.A1_s_at - - - 0 C.G. S.X.
0.08 1e-1 38 Populus trichocarpa PtpAffx.153129.1.A1_at CV268824 hypothetical protein - 9e-2 At1g49030 unknown protein C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.43779.1.S1_at BE493051 - - 5e+0 At4g40011 unknown protein C.G. S.X.
0.03 6e+0 30 Vitis vinifera 1620842_at CB345023 - - 2e+0 At3g15351 unknown protein C.G. S.X.
0.03 6e-1 34 Zea mays Zm.6848.3.S1_at AW562823 - - 5e-12 At1g09640 elongation factor 1B-gamma, putative / eEF-1B gamma, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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