Gene omics information

Query gene ID At1g48920
Gene name ATNUC-L1
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6378.1At1g48920841314ATNUC-L1Encodes the predominant form of the two nucleolin proteins found in Arabidopsis. This protein is involved in rRNA processing, ribosome biosynthesis, and vascular pattern formation. PARL1 localizes to the nucleolus and parl1 mutants accumulate elevated levels of the unspliced 35S pre-rRNA. parl1 mutants also have defects in cotyledon, leaf, sepal, and petal vein patterning and have reduced stature, reduced fertility, increased bushiness, and reduced root length. The sugar-induced expression of ribosome proteins is also reduced in parl1 mutants.S.X.H.G.
0.7184.2At1g31660840053-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBS.X.H.G.
0.7184.2At1g18850838466unknown proteinF:molecular_function unknown;P:biological_process unknown;C:nucleolus;PS.X.H.G.
0.6781.6At1g55900842040TIM50component of a translocase in the mitochondrial inner membraneS.X.H.G.
0.6378.1At4g31790829307diphthine synthase, putative (DPH5)F:methyltransferase activity, diphthine synthase activity;P:peptidyl-diphthamide biosynthetic process from peptidyl-histidine, metabolic process;C:cellular_component unknown;AOMFBPS.X.H.G.
0.6176.7At4g28450828962nucleotide binding / protein bindingThis gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligaseS.X.H.G.
0.4355.3At5g60990836220DEAD/DEAH box helicase, putative (RH10)F:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:unknown;C:cellular_component unknown;BOMFPAVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
16.399.5E-MEXP-849-raw-cel-1181981030
14.799.4E-MEXP-849-raw-cel-1181981006
13.199.4GSM311274Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
12.099.3E-MEXP-849-raw-cel-1181981038
11.999.3GSM311273Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
11.799.3E-MEXP-849-raw-cel-1181980982
11.599.3E-MEXP-849-raw-cel-1181981014
10.799.2E-ATMX-13-raw-cel-1556149743
10.699.2E-MEXP-849-raw-cel-1181981022
10.199.2E-ATMX-13-raw-cel-1556149823
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.131e-1275At3g18610821392ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1)F:nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFBPVAC.G.S.X.
0.091e-552At1g72800843611nuM1-relatedF:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PBFMOAVC.G.S.X.
0.021e-242At5g25160832587ZFP3 (ZINC FINGER PROTEIN 3)Encodes a zinc finger protein containing only a single zinc finger.C.G.S.X.
0.011e-242At5g62190836340PRH75DEAD/DEAH box RNA helicase PRH75C.G.S.X.
0.011e-242At5g56460835747protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVAC.G.S.X.
0.025e-240At5g10970830964zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PC.G.S.X.
0.045e-240At5g41690834172RNA binding / nucleic acid binding / nucleotide bindingF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFPOBAC.G.S.X.
0.015e-240At5g13270831168pentatricopeptide (PPR) repeat-containing proteinEncodes RARE1 (Required for accD RNA Editing 1), a trans-factor essential for C-to-U editing of the chloroplast accD transcript. RARE1 carries 15 PPR (pentatricopeptide repeat) motifs, an E/E+ and a DYW domain (C-terminal tripeptide).C.G.S.X.
0.025e-240At4g19620827704unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.022e-242Glycine maxGmaAffx.64480.1.A1_atBU544442--5e-3At3g56580zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.042e-344Hordeum vulgareContig487_s_atContig487--2e-3At1g48920ATNUC-L1C.G.S.X.
0.041e-759Oryza sativaOs08g0192900AK103422.1-RNA-binding region RNP-1 (RNA recognition motif)domain containing protein7e-8At1g48920ATNUC-L1C.G.S.X.
0.062e-242Populus trichocarpaPtpAffx.10875.1.S1_atCV275219hypothetical protein-2e-2At1g48920ATNUC-L1C.G.S.X.
0.032e-138Triticum aestivumTa.20466.1.S1_atCK209102--3e-1At1g48920ATNUC-L1C.G.S.X.
0.021e+034Vitis vinifera1621435_s_atCF515294hypothetical protein LOC100253802-2e+0At2g18040PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1)C.G.S.X.
0.036e-342Zea maysZm.4981.1.A1_atCK826720--3e-3At3g18610ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0080056Vascular tissue pattern formation as it occurs in the petal of vascular plants.
XGO:0080057Vascular tissue pattern formation as it occurs in the sepal of vascular plants.
XGO:0000478Any endonucleolytic cleavage involved in the conversion of a primary ribosomal RNA (rRNA) transcript into a mature rRNA molecule. Some endonucleolytic cleavages produce the mature end, while others are a step in the process of generating the mature end from the pre-rRNA.
XGO:0010305Vascular tissue pattern formation as it occurs in the leaf of vascular plants.
XGO:0010588Vascular tissue pattern formation as it occurs in the cotyledon of vascular plants.
XGO:0048364The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo.
XGO:0048366The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure.
XGO:0048367The process whose specific outcome is the progression of the shoot over time, from its formation to the mature structure.
XGO:0006364Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
SGO:0042254The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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