CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g48660

Gene name auxin-responsive GH3 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.70 83.5 At1g48660 841288 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMF S.X. H.G.
0.71 84.2 At5g03860 831690 MLS (MALATE SYNTHASE) Encodes a protein with malate synthase activity. S.X. H.G.
0.67 81.6 At2g47780 819390 rubber elongation factor (REF) protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.61 76.7 At3g21720 821726 ICL (ISOCITRATE LYASE) Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL). S.X. H.G.
0.59 74.7 At5g14450 831296 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOM S.X. H.G.
0.57 73.8 At4g36880 829841 CP1 (CYSTEINE PROTEINASE1) F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAF S.X. H.G.
0.52 67.4 At4g39500 830104 CYP96A11 member of CYP96A S.X. H.G.
0.50 65.3 At1g33790 840271 jacalin lectin family protein F:unknown;P:biological_process unknown;C:chloroplast;PO S.X. H.G.
0.47 61.2 At2g40220 818614 ABI4 (ABA INSENSITIVE 4) encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings. S.X. H.G.
0.46 59.8 At1g60090 842304 BGLU4 (BETA GLUCOSIDASE 4) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
186.7 100.0 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
125.5 99.9 GSM133316 RIKEN-LI3B GSE5701 AtGenExpress: Basic hormone treatment of seeds
115.5 99.9 GSM133309 RIKEN-NAKABAYASHI4B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
111.7 99.9 GSM133307 RIKEN-NAKABAYASHI3A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
104.3 99.9 GSM133311 RIKEN-LI1A GSE5701 AtGenExpress: Basic hormone treatment of seeds
98.7 99.9 GSM133313 RIKEN-LI2A GSE5701 AtGenExpress: Basic hormone treatment of seeds
94.4 99.9 GSM133314 RIKEN-LI2B GSE5701 AtGenExpress: Basic hormone treatment of seeds
92.3 99.9 GSM133308 RIKEN-NAKABAYASHI4A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
90.5 99.9 E-MEXP-849-raw-cel-1181980998
89.5 99.9 GSM134315 Penfield_1-17_embryo-PAC_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.69 0 815 At1g48670 841289 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POBMF C.G. S.X.
0.42 2e-35 151 At5g51470 835221 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POBMF C.G. S.X.
0.14 3e-19 97 At1g48690 841291 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POBM C.G. S.X.
0.13 1e-15 85 At1g23160 838924 auxin-responsive GH3 family protein F:unknown;P:response to auxin stimulus;C:unknown;OPBMF C.G. S.X.
0.07 2e-7 57 At5g13320 831173 PBS3 (AVRPPHB SUSCEPTIBLE 3) Encodes PBS3 (avrPphB susceptible), also known as GDG1 (GH3-Like Defense Gene 1)， WIN3 (HopW1-1-Interacting 3). Involved in disease-resistance signaling pathway. Required for accumulation of salicylic acid, activation of defense responses and resistance to Pseudomonas syringae. Expression detected in cotyledons, true leaves, hypocotyls and occasionally in some parts of roots from 10-day-old seedlings. No expression was detected in root, stem, rosette or cauline leaves of mature 4- to 5-week-old plants. C.G. S.X.
0.02 4e-6 54 At2g23170 816849 GH3.3 encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. C.G. S.X.
0.05 4e-3 44 At5g13360 831177 auxin-responsive GH3 family protein F:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMF C.G. S.X.
0.01 1e-2 42 At1g72840 843615 ATP binding / protein binding / transmembrane receptor F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 36 Glycine max Gma.16637.1.A1_at BE657305 - - 2e-6 At4g24740 AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) C.G. S.X.
0.01 2e+0 34 Hordeum vulgare Contig12818_at Contig12818 - - 8e-2 At2g02850 ARPN (PLANTACYANIN) C.G. S.X.
0.01 7e+0 34 Oryza sativa OsAffx.26000.2.S1_at - - - 0 C.G. S.X.
0.03 1e+0 36 Populus trichocarpa Ptp.1099.1.A1_at CK089787 GH3 family protein /// GH3 family protein - 6e-2 At4g03400 DFL2 (DWARF IN LIGHT 2) C.G. S.X.
0.02 2e-1 38 Triticum aestivum Ta.6134.1.A1_at BJ297803 - - 1e+0 At4g13580 disease resistance-responsive family protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1620472_at BQ799192 hypothetical protein LOC100254248 - 5e-6 At4g02630 protein kinase family protein C.G. S.X.
0.02 4e-1 36 Zea mays Zm.16173.1.A1_s_at AY108851.1 hypothetical protein LOC100192560 - 9e-2 At2g45250 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009733 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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