CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g48130

Gene name ATPER1

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g48130 841231 ATPER1 encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought. S.X. H.G.
0.92 96.0 At5g40420 834040 OLEO2 (OLEOSIN 2) Encodes oleosin2, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds. S.X. H.G.
0.92 96.0 At5g44120 834435 CRA1 (CRUCIFERINA) Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. S.X. H.G.
0.88 94.0 At3g22640 821835 PAP85 F:nutrient reservoir activity;P:biological_process unknown;C:plant-type cell wall;POM S.X. H.G.
0.83 91.4 At4g28520 828970 CRU3 (CRUCIFERIN 3) Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. S.X. H.G.
0.82 90.9 At1g73190 843653 TIP3 Moves to the Protein Storage Vacuole in a Golgi independent manner S.X. H.G.
0.77 88.0 At1g04560 839491 AWPM-19-like membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.75 86.9 At2g28490 817397 cupin family protein F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;BMPOFVA S.X. H.G.
0.73 85.5 At5g54740 835563 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding, nutrient reservoir activity;P:lipid transport, pollen development;C:endomembrane system;PO S.X. H.G.
0.71 84.2 At3g27660 822388 OLEO4 (OLEOSIN 4) Encodes oleosin4 (Plant Cell, 2006, 18:1961), a protein found in oil bodies, involved in seed lipid accumulation. Functions in freezing tolerance of seeds. Note: also referred to as OLE3 in Plant Journal 2008, 55:798. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
202.4 100.0 GSM10454 WT Post-Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
201.5 100.0 GSM10456 WT Post-Mature Green Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
163.1 99.9 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
160.9 99.9 GSM131704 ATGE_83_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
153.2 99.9 E-ATMX-1-raw-cel-1112746267
151.5 99.9 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
143.8 99.9 E-ATMX-1-raw-cel-1112746209
143.5 99.9 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
138.4 99.9 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
133.6 99.9 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e+0 34 At4g32480 829383 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.02 1e+0 34 At4g28880 829009 ckl3 (Casein Kinase I-like 3) F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOBPFVA C.G. S.X.
0.01 1e+0 34 At3g47080 823861 binding F:binding;P:unknown;C:unknown;PBOAM C.G. S.X.
0.01 1e+0 34 At1g62130 842509 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:chloroplast;OBMFPAV C.G. S.X.
0.01 1e+0 34 At1g62910 842592 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:unknown;POMFBA C.G. S.X.
0.01 1e+0 34 At1g63150 842619 pentatricopeptide (PPR) repeat-containing protein Transacting siRNA generating locus. C.G. S.X.
0.03 5e+0 32 At5g37290 833703 armadillo/beta-catenin repeat family protein F:binding;P:biological_process unknown;C:unknown;MP C.G. S.X.
0.01 5e+0 32 At4g21410 827893 protein kinase family protein F:kinase activity;P:response to abscisic acid stimulus;C:plasma membrane, vacuole;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 1e-7 57 Glycine max Gma.2923.1.S1_at BM269823 - - 1e-7 At1g48130 ATPER1 C.G. S.X.
0.23 7e-10 63 Hordeum vulgare Contig2853_at Contig2853 - - 2e-9 At1g48130 ATPER1 C.G. S.X.
0.12 1e-2 42 Oryza sativa Os07g0638300 AY336994.1 - Peroxiredoxin 6 (EC 1.11.1.-) (Antioxidant protein2) (1-Cys peroxiredoxin) (1-Cys PRX) (Acidiccalcium-independent phospholipase A2) (EC 3.1.1.-)(aiPLA2) (Non-selenium glutathione peroxidase) (EC1.11.1.7) (NSGPx) (24 kDa protein) (Liver 2D page spot40) (Red blood cells page spot 12) 9e-3 At1g48130 ATPER1 C.G. S.X.
0.13 3e-5 50 Populus trichocarpa Ptp.3110.2.S1_a_at BU832936 1-cys peroxiredoxin - 2e-5 At1g48130 ATPER1 C.G. S.X.
0.19 2e-9 63 Triticum aestivum Ta.14503.1.S1_at AY304482.1 1-Cys-peroxiredoxine - 2e-9 At1g48130 ATPER1 C.G. S.X.
0.10 4e-4 44 Vitis vinifera 1613815_at BQ793122 hypothetical protein LOC100259564 - 2e-3 At1g48130 ATPER1 C.G. S.X.
0.14 2e-3 42 Zea mays Zm.11291.2.S1_x_at CA401976 - - 9e-3 At1g48130 ATPER1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0010231 Any process by which a dormant state is maintained in a seed.
S GO:0009269 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a desiccation stimulus, extreme dryness resulting from the prolonged deprivation of water.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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